UHGV-0147630

Genome information

Genome length 29,007 bps

CDS count 35

Completeness 75.12% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147630
vOTU ID	vOTU-027265
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396372
BioSample	SAMN04161025
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.55
Jumbo phage	No

Genome content
Genome length	29,007 bps
GC content	29.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	89.45%
Average CDS length	742.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147630_1	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0147630_1	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0147630_2	PHROG	phrog_3886	NA	unknown function
UHGV-0147630_2	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0147630_3	PHROG	phrog_25509	NA	unknown function
UHGV-0147630_3	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0147630_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147630_5	UniRef90	UniRef90_A0A1C6LD55	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0147630_5	eggNOG-mapper	755731.Clo1100_1155	NA	NA
UHGV-0147630_5	Structural annotation	PF02996	NA	NA
UHGV-0147630_6	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147630_6	UniRef90	UniRef90_A0A174F3W6	HNH endonuclease domain protein	NA
UHGV-0147630_6	eggNOG-mapper	1391647.AVSV01000039_gene1095	HNH endonuclease	NA
UHGV-0147630_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0147630_6	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0147630_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0147630_7	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147630_7	UniRef90	UniRef90_A0A174GQ50	Phage-related Zn finger domain-containing protein	NA
UHGV-0147630_7	eggNOG-mapper	1567013.A0A0A7RTK8_9CAUD	HNH endonuclease	NA
UHGV-0147630_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0147630_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0147630_8	UniRef90	UniRef90_A0A1C6JZQ6	Phage terminase, small subunit	NA
UHGV-0147630_8	eggNOG-mapper	1196031.ALEG01000039_gene1811	Phage terminase, small subunit	NA
UHGV-0147630_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0147630_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0147630_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0147630_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0147630_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0147630_9	UniRef90	UniRef90_A0A174GQG9	Putative phage terminase, large subunit	NA
UHGV-0147630_9	eggNOG-mapper	1499684.CCNP01000020_gene2290	Terminase	NA
UHGV-0147630_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0147630_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0147630_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147630_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0147630_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0147630_10	UniRef90	UniRef90_A0A174GUK4	Phage portal protein, HK97 family	NA
UHGV-0147630_10	eggNOG-mapper	1476973.JMMB01000007_gene1759	Phage portal protein	NA
UHGV-0147630_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0147630_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0147630_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0147630_10	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0147630_11	KOfam	K06904	NA	NA
UHGV-0147630_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0147630_11	UniRef90	UniRef90_A0A174GVP1	HK97 family phage prohead protease	NA
UHGV-0147630_11	eggNOG-mapper	1476973.JMMB01000007_gene1760	Caudovirus prohead serine protease	NA
UHGV-0147630_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0147630_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0147630_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0147630_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0147630_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0147630_12	UniRef90	UniRef90_A0A174GVS4	Phage major capsid protein, HK97 family	NA
UHGV-0147630_12	eggNOG-mapper	536233.CLO_1363	Phage capsid family	NA
UHGV-0147630_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147630_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147630_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147630_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147630_13	UniRef90	UniRef90_UPI0006A71EE9	head-tail connector protein	NA
UHGV-0147630_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0147630_14	UniRef90	UniRef90_A0A174GUX3	Phage head-tail joining protein	NA
UHGV-0147630_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0147630_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0147630_15	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0147630_15	Structural annotation	TIGR01725	NA	NA
UHGV-0147630_16	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0147630_16	Structural annotation	PF05657	NA	NA
UHGV-0147630_17	PHROG	phrog_88	major tail protein	tail
UHGV-0147630_17	UniRef90	UniRef90_A0A173YQ31	Phage major tail protein, phi13 family	NA
UHGV-0147630_17	eggNOG-mapper	1196031.ALEG01000039_gene1822	phage major tail protein, phi13 family	NA
UHGV-0147630_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0147630_17	COG	COG5492	NA	NA
UHGV-0147630_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0147630_18	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0147630_18	Structural annotation	PF11836	NA	NA
UHGV-0147630_19	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0147630_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0147630_19	UniRef90	UniRef90_A0A174GWB8	TP901 family phage tail tape measure protein	NA
UHGV-0147630_19	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0147630_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0147630_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0147630_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0147630_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0147630_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147630_20	UniRef90	UniRef90_A0A174GT71	Tail component family protein	NA
UHGV-0147630_20	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0147630_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147630_20	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0147630_22	PHROG	phrog_2566	NA	unknown function
UHGV-0147630_22	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0147630_22	eggNOG-mapper	1499683.CCFF01000014_gene3898	NA	NA
UHGV-0147630_23	PHROG	phrog_1401	NA	unknown function
UHGV-0147630_23	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0147630_23	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0147630_23	Structural annotation	PF07761	NA	NA
UHGV-0147630_24	PHROG	phrog_18110	NA	unknown function
UHGV-0147630_24	UniRef90	UniRef90_UPI001C0CFEA2	phage tail protein	NA
UHGV-0147630_24	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0147630_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147630_24	Pfam	PF15711	Interleukin-like EMT inducer	ILEI
UHGV-0147630_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147630_24	COG	COG4926	Phage-related protein	NA
UHGV-0147630_25	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0147630_25	UniRef90	UniRef90_UPI0006BECC9D	BhlA/UviB family holin-like peptide	NA
UHGV-0147630_25	eggNOG-mapper	536232.CLM_2038	BhlA holin family	NA
UHGV-0147630_25	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0147630_26	PHROG	phrog_13256	NA	unknown function
UHGV-0147630_26	eggNOG-mapper	457396.CSBG_01062	NA	NA
UHGV-0147630_27	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147630_27	PHROG	phrog_12727	endolysin	lysis
UHGV-0147630_27	UniRef90	UniRef90_UPI0018A8D11E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147630_27	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147630_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0147630_27	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0147630_27	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0147630_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147630_28	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0147630_28	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0147630_28	UniRef90	UniRef90_UPI001C8BE7E1	ParA family protein	NA
UHGV-0147630_28	eggNOG-mapper	642492.Clole_0842	Anion-transporting ATPase	NA
UHGV-0147630_28	Pfam	PF13614	AAA domain	AAA_31
UHGV-0147630_28	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0147630_28	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0147630_29	PHROG	phrog_6264	NA	unknown function
UHGV-0147630_29	eggNOG-mapper	642492.Clole_0843	NA	NA
UHGV-0147630_30	PHROG	phrog_7540	NA	unknown function
UHGV-0147630_30	UniRef90	UniRef90_B4EV50	Putative phage protein	NA
UHGV-0147630_30	eggNOG-mapper	642492.Clole_0844	NA	NA
UHGV-0147630_31	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0147630_33	PHROG	phrog_2277	NA	unknown function
UHGV-0147630_33	eggNOG-mapper	1567012.A0A0A7RTH9_9VIRU	NA	NA
UHGV-0147630_35	UniRef90	UniRef90_A0A1C6JAK9	DNA binding domain, excisionase family	NA
UHGV-0147630_35	eggNOG-mapper	1415774.U728_1273	Helix-turn-helix domain	NA
UHGV-0147630_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0147630_35	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA