UHGV-0147631

Genome information

Genome length 26,782 bps

CDS count 39

Completeness 70.47% (medium-quality)

geNomad score 0.9665

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147631
vOTU ID	vOTU-017359
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396373
BioSample	SAMN04161025
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9665
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.83
Jumbo phage	No

Genome content
Genome length	26,782 bps
GC content	28.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.72%
Average CDS length	617.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147631_1	eggNOG-mapper	1121342.AUCO01000002_gene892	NA	NA
UHGV-0147631_2	eggNOG-mapper	1499683.CCFF01000014_gene3659	NA	NA
UHGV-0147631_3	UniRef90	UniRef90_UPI000AABEC73	LLM class flavin-dependent oxidoreductase	NA
UHGV-0147631_3	eggNOG-mapper	1414720.CBYM010000002_gene549	NA	NA
UHGV-0147631_3	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0147631_4	eggNOG-mapper	1414720.CBYM010000001_gene718	NA	NA
UHGV-0147631_5	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147631_5	UniRef90	UniRef90_A0A5P3XKD5	AP2 domain-containing protein	NA
UHGV-0147631_5	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0147631_5	Pfam	PF00847	AP2 domain	AP2
UHGV-0147631_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0147631_6	UniRef90	UniRef90_UPI0009B8D613	helix-turn-helix transcriptional regulator	NA
UHGV-0147631_6	eggNOG-mapper	903814.ELI_3181	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0147631_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147631_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0147631_7	AcrCatalog	cluster_32378	NA	NA
UHGV-0147631_8	AcrCatalog	cluster_67405	NA	NA
UHGV-0147631_9	UniRef90	UniRef90_A0A1E8EX01	Beta_helix domain-containing protein	NA
UHGV-0147631_9	eggNOG-mapper	398512.JQKC01000002_gene1699	Right handed beta helix region	NA
UHGV-0147631_9	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0147631_9	Pfam	PF15525	NA	DUF4652
UHGV-0147631_9	COG	COG0760	Peptidyl-prolyl isomerase, parvulin family	NA
UHGV-0147631_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147631_11	PHROG	phrog_670	endolysin	lysis
UHGV-0147631_11	UniRef90	UniRef90_UPI001C8B97BF	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147631_11	eggNOG-mapper	1443122.Z958_08055	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147631_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0147631_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0147631_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0147631_11	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0147631_12	UniRef90	UniRef90_UPI0018A9B2DB	holin	NA
UHGV-0147631_12	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0147631_12	COG	COG5546	NA	NA
UHGV-0147631_13	PHROG	phrog_1863	NA	unknown function
UHGV-0147631_13	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-0147631_14	KOfam	K01186	NEU1; sialidase-1 [EC:3.2.1.18]	NA
UHGV-0147631_14	PHROG	phrog_17334	NA	unknown function
UHGV-0147631_14	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0147631_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0147631_16	PHROG	phrog_6616	tail protein	tail
UHGV-0147631_16	UniRef90	UniRef90_UPI0007AE71C3	gp58-like family protein	NA
UHGV-0147631_16	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0147631_16	COG	COG4926	Phage-related protein	NA
UHGV-0147631_16	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0147631_17	PHROG	phrog_1194	NA	unknown function
UHGV-0147631_17	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0147631_17	Pfam	PF20458	NA	DUF6711
UHGV-0147631_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0147631_18	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0147631_18	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0147631_18	eggNOG-mapper	1414720.CBYM010000002_gene562	phage tail tape measure protein	NA
UHGV-0147631_18	COG	COG1511	NA	NA
UHGV-0147631_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0147631_19	PHROG	phrog_19318	NA	unknown function
UHGV-0147631_19	UniRef90	UniRef90_A0A533S6H6	Phage tail assembly chaperone	NA
UHGV-0147631_19	eggNOG-mapper	1414720.CBYM010000001_gene706	NA	NA
UHGV-0147631_19	Pfam	PF09550	Phage tail assembly chaperone protein, TAC	Phage_TAC_6
UHGV-0147631_20	PHROG	phrog_2115	tail protein	tail
UHGV-0147631_20	eggNOG-mapper	1414720.CBYM010000002_gene564	NA	NA
UHGV-0147631_20	Structural annotation	PF19591	NA	NA
UHGV-0147631_22	PHROG	phrog_158	major tail protein	tail
UHGV-0147631_22	UniRef90	UniRef90_A0A1C6JNH2	Predicted secreted protein	NA
UHGV-0147631_22	eggNOG-mapper	1414720.CBYM010000002_gene566	Phage tail tube protein	NA
UHGV-0147631_22	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0147631_22	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0147631_23	UniRef90	UniRef90_UPI000BB98E7D	NA	NA
UHGV-0147631_23	eggNOG-mapper	1414720.CBYM010000002_gene567	NA	NA
UHGV-0147631_23	Structural annotation	PF11367	NA	NA
UHGV-0147631_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0147631_24	UniRef90	UniRef90_A0A1C6JN94	Phage protein, HK97 gp10 family	NA
UHGV-0147631_24	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0147631_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0147631_24	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0147631_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0147631_25	UniRef90	UniRef90_A0A1C6JMX8	Bacteriophage head-tail adaptor	NA
UHGV-0147631_25	eggNOG-mapper	1414720.CBYM010000002_gene569	Phage head-tail joining protein	NA
UHGV-0147631_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0147631_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0147631_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0147631_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0147631_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0147631_26	UniRef90	UniRef90_UPI001055080F	head-tail connector protein	NA
UHGV-0147631_26	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-0147631_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0147631_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0147631_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0147631_27	PHROG	phrog_6865	NA	unknown function
UHGV-0147631_27	Structural annotation	PF01281	NA	NA
UHGV-0147631_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0147631_28	UniRef90	UniRef90_A0A1C6JMU6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147631_28	eggNOG-mapper	1196031.ALEG01000039_gene1816	Phage capsid family	NA
UHGV-0147631_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147631_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147631_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147631_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147631_29	KOfam	K06904	NA	NA
UHGV-0147631_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0147631_29	UniRef90	UniRef90_A0A1C6JMX0	Phage prohead protease, HK97 family	NA
UHGV-0147631_29	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0147631_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0147631_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0147631_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0147631_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0147631_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0147631_30	UniRef90	UniRef90_A0A1C6JMZ1	Phage portal protein, HK97 family	NA
UHGV-0147631_30	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0147631_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0147631_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0147631_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0147631_30	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0147631_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0147631_32	UniRef90	UniRef90_A0A1C6JMN2	Phage terminase-like protein, large subunit	NA
UHGV-0147631_32	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0147631_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0147631_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0147631_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147631_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0147631_33	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0147631_33	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0147631_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0147631_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0147631_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147631_34	UniRef90	UniRef90_A0A1C6JML1	HNH endonuclease	NA
UHGV-0147631_34	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0147631_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0147631_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147631_35	UniRef90	UniRef90_A0A1C6JMI4	Alternative sigma factor RpoH	NA
UHGV-0147631_35	eggNOG-mapper	1414720.CBYM010000002_gene578	NA	NA
UHGV-0147631_35	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0147631_36	PHROG	phrog_25509	NA	unknown function
UHGV-0147631_36	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0147631_39	PHROG	phrog_3886	NA	unknown function
UHGV-0147631_39	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA