UHGV-0147808

Genome information

vOTU vOTU-019434

Genome length 16,990 bps

CDS count 24

Completeness 75.24% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147808
vOTU ID	vOTU-019434
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_403684
BioSample	SAMN05414978
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.88
Jumbo phage	No

Genome content
Genome length	16,990 bps
GC content	39.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	92.64%
Average CDS length	661.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147808_1	KOfam	K07316	mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0147808_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0147808_1	UniRef90	UniRef90_UPI000CE9910C	site-specific DNA-methyltransferase	NA
UHGV-0147808_1	eggNOG-mapper	1504981.KO116_4047	DNA methylase	NA
UHGV-0147808_1	PADLOC	MTase_III_00010	Type III methyltransferase	RM
UHGV-0147808_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0147808_1	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0147808_2	PHROG	phrog_24267	NA	unknown function
UHGV-0147808_2	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0147808_2	Structural annotation	COG4675	NA	NA
UHGV-0147808_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0147808_4	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0147808_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0147808_5	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0147808_5	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0147808_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0147808_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0147808_6	PHROG	phrog_2248	tail protein	tail
UHGV-0147808_6	UniRef90	UniRef90_A0A843HHX8	Caud_tail_N domain-containing protein	NA
UHGV-0147808_6	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0147808_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0147808_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0147808_6	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0147808_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0147808_7	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0147808_7	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0147808_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0147808_9	UniRef90	UniRef90_A0A3B9G289	Peptidase C51 domain-containing protein	NA
UHGV-0147808_9	eggNOG-mapper	1123301.KB904188_gene1035	CHAP domain protein	NA
UHGV-0147808_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0147808_9	COG	COG3942	Surface antigen	NA
UHGV-0147808_9	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0147808_11	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-0147808_11	Pfam	PF05257	CHAP domain	CHAP
UHGV-0147808_11	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0147808_11	Structural annotation	PF08239, TIGR02594, COG3942, COG4991	NA	NA
UHGV-0147808_12	PHROG	phrog_199	holin	lysis
UHGV-0147808_12	UniRef90	UniRef90_UPI001D0ECA44	phage holin family protein	NA
UHGV-0147808_12	eggNOG-mapper	1305836.AXVE01000012_gene2	Bacteriophage holin family	NA
UHGV-0147808_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0147808_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0147808_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0147808_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0147808_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0147808_13	UniRef90	UniRef90_A0A843HIN8	Phage DNA encapsidation protein	NA
UHGV-0147808_13	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0147808_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0147808_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0147808_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0147808_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0147808_14	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0147808_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0147808_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0147808_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0147808_16	Structural annotation	PF17427	NA	NA