UHGV-0147836

Genome information

Genome length 40,974 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147836
vOTU ID	vOTU-056274
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_437655
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.18
Jumbo phage	No

Genome content
Genome length	40,974 bps
GC content	52.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.10%
Average CDS length	540.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147836_1	PHROG	phrog_1863	NA	unknown function
UHGV-0147836_1	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0147836_2	PHROG	phrog_372	tail protein	tail
UHGV-0147836_2	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0147836_2	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-0147836_2	Pfam	PF05895	NA	DUF859
UHGV-0147836_2	Structural annotation	PF05895, PF08931, MF_04116, NF010681, COG3291	NA	NA
UHGV-0147836_3	PHROG	phrog_3558	tail protein	tail
UHGV-0147836_3	UniRef90	UniRef90_A0A4Q7PKS7	Phage minor structural protein	NA
UHGV-0147836_3	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0147836_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147836_3	COG	COG4926	Phage-related protein	NA
UHGV-0147836_3	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0147836_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147836_4	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0147836_4	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0147836_4	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0147836_5	PHROG	phrog_19074	NA	unknown function
UHGV-0147836_5	UniRef90	UniRef90_A0A3R6QV30	Phage tail tape measure protein	NA
UHGV-0147836_5	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0147836_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0147836_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0147836_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0147836_5	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0147836_6	PHROG	phrog_7115	NA	unknown function
UHGV-0147836_6	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0147836_6	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0147836_6	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0147836_6	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0147836_8	PHROG	phrog_885	major tail protein	tail
UHGV-0147836_8	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0147836_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0147836_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0147836_9	PHROG	phrog_17405	head protein	head and packaging
UHGV-0147836_9	Structural annotation	PF11367	NA	NA
UHGV-0147836_10	PHROG	phrog_17977	NA	unknown function
UHGV-0147836_10	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0147836_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0147836_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0147836_12	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0147836_12	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0147836_12	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0147836_12	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0147836_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0147836_13	Structural annotation	PF06810	NA	NA
UHGV-0147836_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0147836_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0147836_14	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0147836_14	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0147836_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0147836_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0147836_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0147836_16	PHROG	phrog_3896	NA	unknown function
UHGV-0147836_16	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0147836_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0147836_18	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0147836_18	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0147836_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0147836_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0147836_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0147836_19	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0147836_19	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0147836_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0147836_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0147836_19	COG	COG2369	NA	NA
UHGV-0147836_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0147836_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0147836_20	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0147836_20	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0147836_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0147836_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0147836_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0147836_21	PHROG	phrog_10250	NA	unknown function
UHGV-0147836_21	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0147836_21	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0147836_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0147836_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0147836_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0147836_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0147836_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0147836_22	PHROG	phrog_21498	NA	unknown function
UHGV-0147836_22	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0147836_22	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0147836_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0147836_22	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0147836_23	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0147836_23	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0147836_23	Structural annotation	PF13542	NA	NA
UHGV-0147836_24	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0147836_24	Structural annotation	TIGR01636	NA	NA
UHGV-0147836_29	PHROG	phrog_3136	NA	unknown function
UHGV-0147836_29	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0147836_29	Pfam	PF04266	ASCH domain	ASCH
UHGV-0147836_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0147836_31	PHROG	phrog_22529	NA	unknown function
UHGV-0147836_31	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0147836_31	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0147836_31	Pfam	PF06725	3D domain	3D
UHGV-0147836_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0147836_31	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0147836_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0147836_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147836_34	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0147836_34	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0147836_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0147836_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0147836_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0147836_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0147836_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0147836_36	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0147836_36	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0147836_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0147836_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0147836_36	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0147836_37	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0147836_38	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0147836_38	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0147836_38	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0147836_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0147836_38	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0147836_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0147836_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0147836_39	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0147836_39	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0147836_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0147836_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0147836_39	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0147836_40	PHROG	phrog_16304	NA	unknown function
UHGV-0147836_40	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0147836_40	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0147836_40	Pfam	PF19808	NA	DUF6291
UHGV-0147836_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0147836_40	Structural annotation	PF19808	NA	NA
UHGV-0147836_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0147836_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147836_42	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0147836_42	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0147836_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0147836_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0147836_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0147836_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0147836_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0147836_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0147836_43	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0147836_43	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0147836_43	Structural annotation	PF05772	NA	NA
UHGV-0147836_44	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0147836_44	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0147836_45	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0147836_45	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0147836_45	Pfam	PF06378	NA	DUF1071
UHGV-0147836_45	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0147836_46	Structural annotation	PF00412	NA	NA
UHGV-0147836_48	PHROG	phrog_4433	NA	unknown function
UHGV-0147836_48	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0147836_48	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0147836_50	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0147836_50	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0147836_51	eggNOG-mapper	1292035.H476_1409	NA	NA
UHGV-0147836_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147836_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0147836_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0147836_54	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0147836_54	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0147836_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0147836_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0147836_57	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0147836_57	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0147836_58	KOfam	K14059	int; integrase	NA
UHGV-0147836_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0147836_58	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0147836_58	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0147836_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147836_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0147836_58	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0147836_59	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0147836_60	Structural annotation	PF12510	NA	NA
UHGV-0147836_61	PHROG	phrog_20016	NA	unknown function
UHGV-0147836_61	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0147836_61	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0147836_61	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0147836_62	PHROG	phrog_16490	NA	unknown function
UHGV-0147836_62	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0147836_63	PHROG	phrog_22984	NA	unknown function
UHGV-0147836_64	PHROG	phrog_21718	NA	unknown function
UHGV-0147836_64	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0147836_65	PHROG	phrog_3754	NA	unknown function
UHGV-0147836_65	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0147836_67	eggNOG-mapper	595536.ADVE02000001_gene2685	NA	NA
UHGV-0147836_67	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0147836_67	COG	COG4453	NA	NA
UHGV-0147836_68	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147836_68	PHROG	phrog_435	endolysin	lysis
UHGV-0147836_68	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147836_68	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0147836_68	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0147836_68	Pfam	PF05036	SPOR domain	SPOR
UHGV-0147836_68	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147836_68	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0147836_69	PHROG	phrog_881	holin	lysis
UHGV-0147836_69	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0147836_69	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0147836_69	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0147836_69	Structural annotation	PF16938	NA	NA