UHGV-0147913

Genome information

Genome length 56,872 bps

CDS count 78

Completeness 100.00% (complete)

geNomad score 0.9642

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147913
vOTU ID	vOTU-005159
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396277
BioSample	SAMN04161026
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9642
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.94
Jumbo phage	No

Genome content
Genome length	56,872 bps
GC content	31.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	86.05%
Average CDS length	629.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147913_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0147913_1	eggNOG-mapper	1499685.CCFJ01000055_gene1938	TIGRFAM Phage	NA
UHGV-0147913_1	COG	COG5362	Phage terminase large subunit	NA
UHGV-0147913_3	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0147913_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0147913_3	UniRef90	UniRef90_UPI001CCE3FAB	recombinase family protein	NA
UHGV-0147913_3	eggNOG-mapper	315730.BcerKBAB4_3124	resolvase	NA
UHGV-0147913_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0147913_3	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0147913_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0147913_4	Structural annotation	PF10694	NA	NA
UHGV-0147913_5	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0147913_5	UniRef90	UniRef90_D9ZNI4	Putative DNA ligase	NA
UHGV-0147913_5	eggNOG-mapper	871584.D9ZNI4_9CAUD	DNA ligase (NAD+) activity	NA
UHGV-0147913_6	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0147913_6	UniRef90	UniRef90_UPI001CCA147B	phBC6A51 family helix-turn-helix protein	NA
UHGV-0147913_6	eggNOG-mapper	485916.Dtox_1845	Helix-turn-helix of insertion element transposase	NA
UHGV-0147913_6	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0147913_6	Structural annotation	PF13022	NA	NA
UHGV-0147913_11	PHROG	phrog_6361	NA	unknown function
UHGV-0147913_11	UniRef90	UniRef90_A0A1Y4SQA2	SprT-like domain-containing protein	NA
UHGV-0147913_11	eggNOG-mapper	1121091.AUMP01000047_gene1329	SprT-like family	NA
UHGV-0147913_11	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0147913_12	AcrCatalog	cluster_37489	NA	NA
UHGV-0147913_14	UniRef90	UniRef90_A0A0U9HBP7	Short C-terminal domain-containing protein	NA
UHGV-0147913_14	eggNOG-mapper	536232.CLM_1664	NA	NA
UHGV-0147913_17	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147913_17	PHROG	phrog_14642	endolysin	lysis
UHGV-0147913_17	UniRef90	UniRef90_A0A3T0KUB6	Hydrolase_2 domain-containing protein	NA
UHGV-0147913_17	eggNOG-mapper	1227349.C170_15705	Cell wall hydrolyses involved in spore germination	NA
UHGV-0147913_17	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0147913_17	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0147913_18	PHROG	phrog_13088	NA	unknown function
UHGV-0147913_19	KOfam	K09787	NA	NA
UHGV-0147913_19	PHROG	phrog_3512	sigma factor	transcription regulation
UHGV-0147913_19	UniRef90	UniRef90_A0A645CD44	Sigma70_r4 domain-containing protein	NA
UHGV-0147913_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0147913_19	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0147913_20	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0147913_20	UniRef90	UniRef90_UPI001C9AD52E	AAA family ATPase	NA
UHGV-0147913_20	eggNOG-mapper	485916.Dtox_3893	dephospho-CoA kinase activity	NA
UHGV-0147913_20	Pfam	PF21448	Deoxynucleotide monophosphate kinase	DNMK
UHGV-0147913_20	COG	COG0237	Dephospho-CoA kinase	NA
UHGV-0147913_20	Structural annotation	PF21448, MF_01111, TIGR01223, COG0237	NA	NA
UHGV-0147913_21	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0147913_21	UniRef90	UniRef90_UPI001CCAA82E	helix-turn-helix transcriptional regulator	NA
UHGV-0147913_21	eggNOG-mapper	720555.BATR1942_09640	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0147913_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0147913_21	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0147913_27	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0147913_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0147913_27	UniRef90	UniRef90_UPI001CC9D777	DNA polymerase	NA
UHGV-0147913_27	eggNOG-mapper	240302.BN982_04135	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0147913_27	PADLOC	drt-cluster58	DRT	DRT
UHGV-0147913_27	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0147913_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0147913_27	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0147913_27	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0147913_28	KOfam	K03317	TC.CNT; concentrative nucleoside transporter, CNT family	NA
UHGV-0147913_28	PHROG	phrog_25571	NA	unknown function
UHGV-0147913_28	UniRef90	UniRef90_A0A7U6KGX2	Na+ dependent nucleoside transporter NupC	NA
UHGV-0147913_28	eggNOG-mapper	1499683.CCFF01000016_gene803	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family	NA
UHGV-0147913_28	Pfam	PF01773	Na+ dependent nucleoside transporter N-terminus	Nucleos_tra2_N
UHGV-0147913_28	Pfam	PF07662	Na+ dependent nucleoside transporter C-terminus	Nucleos_tra2_C
UHGV-0147913_28	COG	COG1972	Nucleoside permease NupC	NA
UHGV-0147913_28	Structural annotation	PF07662, PF01773, TIGR00804, COG1972	NA	NA
UHGV-0147913_30	KOfam	K08728	E2.4.2.6; nucleoside deoxyribosyltransferase [EC:2.4.2.6]	NA
UHGV-0147913_30	PHROG	phrog_7995	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0147913_30	UniRef90	UniRef90_UPI00083492B0	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0147913_30	eggNOG-mapper	1391647.AVSV01000020_gene2183	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0147913_30	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0147913_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0147913_30	Structural annotation	PF05014, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0147913_34	KOfam	K15519	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	NA
UHGV-0147913_34	PHROG	phrog_761	thymidylate kinase	other
UHGV-0147913_34	UniRef90	UniRef90_UPI000D1821DE	deoxyguanosine kinase-like	NA
UHGV-0147913_34	eggNOG-mapper	536233.CLO_1949	Deoxynucleoside kinase	NA
UHGV-0147913_34	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0147913_34	COG	COG1428	Deoxyadenosine/deoxycytidine kinase	NA
UHGV-0147913_38	KOfam	K00857	tdk, TK; thymidine kinase [EC:2.7.1.21]	NA
UHGV-0147913_38	PHROG	phrog_592	thymidine kinase	other
UHGV-0147913_38	UniRef90	UniRef90_UPI000D186150	thymidine kinase	NA
UHGV-0147913_38	eggNOG-mapper	720555.BATR1942_09710	thymidine kinase	NA
UHGV-0147913_38	Pfam	PF00265	Thymidine kinase	TK
UHGV-0147913_38	COG	COG1435	Thymidine kinase	NA
UHGV-0147913_38	Structural annotation	PF00265, MF_00124, NF003296, COG1435	NA	NA
UHGV-0147913_40	PHROG	phrog_872	NA	unknown function
UHGV-0147913_40	UniRef90	UniRef90_A0A373TH61	NA	NA
UHGV-0147913_40	eggNOG-mapper	1118063.I7ILS0_9CAUD	NA	NA
UHGV-0147913_40	Pfam	PF11195	NA	DUF2829
UHGV-0147913_40	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0147913_40	Structural annotation	PF11195	NA	NA
UHGV-0147913_41	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-0147913_41	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0147913_41	Structural annotation	PF11195	NA	NA
UHGV-0147913_42	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0147913_42	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147913_42	UniRef90	UniRef90_UPI000D18733E	crossover junction endodeoxyribonuclease RuvC-like	NA
UHGV-0147913_42	eggNOG-mapper	240302.BN982_04139	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0147913_42	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0147913_42	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0147913_42	Structural annotation	PF02075, MF_00034, TIGR00228, COG0817	NA	NA
UHGV-0147913_44	KOfam	K07464	cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]	NA
UHGV-0147913_44	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0147913_44	UniRef90	UniRef90_UPI001CCFBB2F	PD-(D/E)XK nuclease family protein	NA
UHGV-0147913_44	eggNOG-mapper	485916.Dtox_1875	NA	NA
UHGV-0147913_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0147913_44	Structural annotation	PF01930, TIGR00372, COG2887	NA	NA
UHGV-0147913_45	PHROG	phrog_6883	NA	unknown function
UHGV-0147913_45	eggNOG-mapper	370438.PTH_2160	NA	NA
UHGV-0147913_45	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0147913_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0147913_48	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0147913_48	UniRef90	UniRef90_UPI001CCA0547	toprim domain-containing protein	NA
UHGV-0147913_48	eggNOG-mapper	720555.BATR1942_09755	Toprim-like	NA
UHGV-0147913_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0147913_48	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0147913_48	Structural annotation	PF01807, PF19898, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0147913_52	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0147913_52	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0147913_52	UniRef90	UniRef90_UPI001CCFA813	AAA family ATPase	NA
UHGV-0147913_52	eggNOG-mapper	720555.BATR1942_09765	AAA domain	NA
UHGV-0147913_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0147913_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-0147913_52	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0147913_53	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0147913_53	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0147913_53	UniRef90	UniRef90_UPI001CCEB133	DnaA/Hda family protein	NA
UHGV-0147913_53	eggNOG-mapper	720555.BATR1942_09770	DNA-dependent DNA replication	NA
UHGV-0147913_53	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0147913_53	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0147913_53	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0147913_54	UniRef90	UniRef90_UPI001CCDD611	TaqI family restriction endonuclease	NA
UHGV-0147913_54	eggNOG-mapper	720555.BATR1942_09880	NA	NA
UHGV-0147913_56	PHROG	phrog_14312	NA	unknown function
UHGV-0147913_57	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0147913_57	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0147913_57	UniRef90	UniRef90_UPI001CCB8E10	ParM/StbA family protein	NA
UHGV-0147913_57	eggNOG-mapper	1443122.Z958_p0069	Heat shock 70 kDa protein	NA
UHGV-0147913_57	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0147913_57	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0147913_57	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0147913_58	PHROG	phrog_12720	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147913_58	UniRef90	UniRef90_UPI001CCDCB3F	helix-turn-helix domain-containing protein	NA
UHGV-0147913_58	eggNOG-mapper	720555.BATR1942_09775	Helix-turn-helix domain	NA
UHGV-0147913_58	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0147913_61	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147913_61	PHROG	phrog_435	endolysin	lysis
UHGV-0147913_61	UniRef90	UniRef90_UPI001EE5EF6D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147913_61	eggNOG-mapper	1280689.AUJC01000007_gene3302	Ami_3	NA
UHGV-0147913_61	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0147913_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147913_61	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0147913_62	PHROG	phrog_2566	NA	unknown function
UHGV-0147913_62	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0147913_63	eggNOG-mapper	1499683.CCFF01000017_gene2916	NA	NA
UHGV-0147913_64	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0147913_64	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0147913_64	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0147913_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147913_64	COG	COG4926	Phage-related protein	NA
UHGV-0147913_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147913_65	UniRef90	UniRef90_UPI001CCD112E	phage tail family protein	NA
UHGV-0147913_65	eggNOG-mapper	1120973.AQXL01000096_gene3017	Phage tail protein	NA
UHGV-0147913_65	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0147913_65	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0147913_65	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147913_65	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0147913_66	PHROG	phrog_4200	tail length tape measure protein	tail
UHGV-0147913_66	eggNOG-mapper	1196031.ALEG01000039_gene1899	phage tail tape measure protein	NA
UHGV-0147913_66	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0147913_66	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0147913_68	PHROG	phrog_2115	tail protein	tail
UHGV-0147913_68	UniRef90	UniRef90_UPI001BE80F6E	gene transfer agent family protein	NA
UHGV-0147913_68	eggNOG-mapper	935948.KE386495_gene1327	NA	NA
UHGV-0147913_68	Structural annotation	PF19591	NA	NA
UHGV-0147913_69	PHROG	phrog_1407	major tail protein	tail
UHGV-0147913_69	UniRef90	UniRef90_UPI001C9B54CF	phage major tail protein, TP901-1 family	NA
UHGV-0147913_69	eggNOG-mapper	720555.BATR1942_09820	Phage tail tube protein	NA
UHGV-0147913_69	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0147913_69	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0147913_69	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0147913_69	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0147913_70	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0147913_71	eggNOG-mapper	720555.BATR1942_09830	NA	NA
UHGV-0147913_73	PHROG	phrog_10959	NA	unknown function
UHGV-0147913_73	eggNOG-mapper	720555.BATR1942_09840	NA	NA
UHGV-0147913_74	PHROG	phrog_212	major head protein	head and packaging
UHGV-0147913_74	UniRef90	UniRef90_UPI001CCD26A6	phage major capsid protein	NA
UHGV-0147913_74	eggNOG-mapper	370438.PTH_2189	NA	NA
UHGV-0147913_74	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0147913_74	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0147913_75	eggNOG-mapper	240302.BN982_04108	NA	NA
UHGV-0147913_76	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0147913_76	UniRef90	UniRef90_UPI001CCE1C1E	phage minor capsid protein	NA
UHGV-0147913_76	eggNOG-mapper	720555.BATR1942_09860	Phage minor capsid protein 2	NA
UHGV-0147913_76	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0147913_77	PHROG	phrog_533	portal protein	head and packaging
UHGV-0147913_77	UniRef90	UniRef90_UPI001CCA7392	phage portal protein	NA
UHGV-0147913_77	eggNOG-mapper	370438.PTH_2192	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0147913_77	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0147913_77	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0147913_78	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0147913_78	UniRef90	UniRef90_UPI001CCCF999	phage terminase large subunit	NA
UHGV-0147913_78	eggNOG-mapper	485916.Dtox_3908	TIGRFAM Phage uncharacterised protein, C-terminal	NA
UHGV-0147913_78	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0147913_78	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0147913_78	COG	COG5362	Phage terminase large subunit	NA
UHGV-0147913_78	Structural annotation	PF17289, MF_04147, NF033889, COG5362	NA	NA