UHGV-0147963

Genome information

Genome length 30,406 bps

CDS count 60

Completeness 92.05% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147963
vOTU ID	vOTU-067444
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_412431
BioSample	SAMN05414933
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.56
Jumbo phage	No

Genome content
Genome length	30,406 bps
GC content	54.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	95.21%
Average CDS length	489.30 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147963_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0147963_1	PHROG	phrog_291	endolysin	lysis
UHGV-0147963_1	UniRef90	UniRef90_A0A316NNJ5	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0147963_1	eggNOG-mapper	552398.HMPREF0866_01858	Glycosyl hydrolases family 25	NA
UHGV-0147963_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0147963_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0147963_2	PHROG	phrog_199	holin	lysis
UHGV-0147963_2	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0147963_2	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0147963_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0147963_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0147963_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0147963_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0147963_3	PHROG	phrog_14030	NA	unknown function
UHGV-0147963_3	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0147963_3	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0147963_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0147963_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0147963_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0147963_3	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0147963_4	PHROG	phrog_918	NA	unknown function
UHGV-0147963_4	UniRef90	UniRef90_UPI0013775FB5	NA	NA
UHGV-0147963_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0147963_4	Pfam	PF19791	NA	DUF6275
UHGV-0147963_4	Structural annotation	PF19791	NA	NA
UHGV-0147963_9	PHROG	phrog_19111	NA	unknown function
UHGV-0147963_9	Structural annotation	PF07210, PF01404, TIGR03000, NF038128, COG2512	NA	NA
UHGV-0147963_10	PHROG	phrog_19280	NA	unknown function
UHGV-0147963_10	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0147963_10	Structural annotation	PF10651	NA	NA
UHGV-0147963_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0147963_13	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0147963_13	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0147963_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147963_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147963_13	COG	COG4926	Phage-related protein	NA
UHGV-0147963_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0147963_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147963_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0147963_14	eggNOG-mapper	1154860.SAG0136_08140	phage tail	NA
UHGV-0147963_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0147963_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147963_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0147963_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0147963_15	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0147963_15	eggNOG-mapper	888049.HMPREF8578_0706	Phage tail tape measure protein	NA
UHGV-0147963_15	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0147963_15	Structural annotation	COG5280	NA	NA
UHGV-0147963_18	PHROG	phrog_88	major tail protein	tail
UHGV-0147963_18	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0147963_18	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0147963_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0147963_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0147963_19	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0147963_19	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0147963_19	Structural annotation	TIGR01725	NA	NA
UHGV-0147963_20	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0147963_20	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0147963_21	PHROG	phrog_19734	NA	unknown function
UHGV-0147963_21	UniRef90	UniRef90_A0A3E3E563	Head-tail adaptor protein	NA
UHGV-0147963_21	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0147963_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0147963_22	PHROG	phrog_2550	NA	unknown function
UHGV-0147963_22	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0147963_22	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0147963_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0147963_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0147963_23	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147963_23	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0147963_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147963_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147963_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147963_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147963_24	KOfam	K06904	NA	NA
UHGV-0147963_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0147963_24	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0147963_24	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0147963_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0147963_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0147963_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0147963_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0147963_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0147963_25	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0147963_25	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0147963_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0147963_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0147963_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0147963_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0147963_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0147963_26	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0147963_26	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0147963_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0147963_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0147963_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147963_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0147963_27	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0147963_27	UniRef90	UniRef90_UPI0004135207	P27 family phage terminase small subunit	NA
UHGV-0147963_27	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0147963_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0147963_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0147963_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147963_28	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0147963_28	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0147963_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0147963_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0147963_30	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0147963_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0147963_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0147963_32	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0147963_32	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0147963_33	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0147963_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0147963_33	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-0147963_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0147963_33	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0147963_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0147963_33	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0147963_33	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0147963_40	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0147963_41	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0147963_41	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0147963_41	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0147963_41	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0147963_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0147963_42	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0147963_42	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0147963_42	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0147963_42	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0147963_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0147963_42	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0147963_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0147963_42	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0147963_43	PHROG	phrog_24518	NA	unknown function
UHGV-0147963_43	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0147963_44	PHROG	phrog_824	NA	unknown function
UHGV-0147963_44	UniRef90	UniRef90_A0A6N9PZV5	VRR-NUC domain-containing protein (Fragment)	NA
UHGV-0147963_44	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0147963_44	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0147963_59	UniRef90	UniRef90_A0A844LSY0	FlgT_C domain-containing protein	NA
UHGV-0147963_59	eggNOG-mapper	875454.BAEW01000002_gene513	NA	NA
UHGV-0147963_59	Structural annotation	PF16538	NA	NA