UHGV-0148065

Genome information

Genome length 43,477 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148065
vOTU ID	vOTU-061829
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442496
BioSample	SAMN06010519
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.23
Jumbo phage	No

Genome content
Genome length	43,477 bps
GC content	30.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.38%
Average CDS length	582.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148065_2	PHROG	phrog_1309	endolysin	lysis
UHGV-0148065_2	UniRef90	UniRef90_A0A133ZZY6	CHAP domain protein	NA
UHGV-0148065_2	eggNOG-mapper	1321820.HMPREF1983_00914	CHAP domain	NA
UHGV-0148065_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0148065_2	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0148065_2	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0148065_2	Structural annotation	PF08460, PF05382, TIGR02219, COG0791	NA	NA
UHGV-0148065_3	PHROG	phrog_1129	holin	lysis
UHGV-0148065_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0148065_4	PHROG	phrog_32123	NA	unknown function
UHGV-0148065_4	UniRef90	UniRef90_UPI00094EEBC2	collagen-like protein	NA
UHGV-0148065_4	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-0148065_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0148065_4	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0148065_4	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0148065_5	PHROG	phrog_4257	NA	unknown function
UHGV-0148065_5	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-0148065_5	eggNOG-mapper	562981.HMPREF0428_00966	NA	NA
UHGV-0148065_7	eggNOG-mapper	525255.HMPREF0077_0366	NA	NA
UHGV-0148065_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0148065_7	Structural annotation	PF07104	NA	NA
UHGV-0148065_9	PHROG	phrog_1330	tail protein	tail
UHGV-0148065_9	UniRef90	UniRef90_UPI000930399F	tail fiber domain-containing protein	NA
UHGV-0148065_9	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0148065_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0148065_9	COG	COG1511	NA	NA
UHGV-0148065_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0148065_10	eggNOG-mapper	1321820.HMPREF1983_00923	tail component	NA
UHGV-0148065_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148065_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0148065_11	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0148065_11	UniRef90	UniRef90_UPI000931FE8C	phage tail tape measure protein	NA
UHGV-0148065_11	eggNOG-mapper	435838.HMPREF0786_00863	Phage tail tape measure protein	NA
UHGV-0148065_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0148065_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0148065_11	COG	COG3953	SLT domain protein	NA
UHGV-0148065_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0148065_13	PHROG	phrog_88	major tail protein	tail
UHGV-0148065_13	UniRef90	UniRef90_UPI00156DA45B	phage tail protein	NA
UHGV-0148065_13	eggNOG-mapper	471875.RUMLAC_02245	phage major tail protein, phi13 family	NA
UHGV-0148065_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0148065_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0148065_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0148065_15	UniRef90	UniRef90_UPI000E0BDB75	HK97 gp10 family phage protein	NA
UHGV-0148065_15	eggNOG-mapper	1121423.JONT01000041_gene950	NA	NA
UHGV-0148065_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148065_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0148065_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0148065_16	UniRef90	UniRef90_UPI0009311A76	phage head closure protein	NA
UHGV-0148065_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0148065_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0148065_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0148065_17	UniRef90	UniRef90_UPI000931A3A2	head-tail connector protein	NA
UHGV-0148065_17	eggNOG-mapper	796940.HMPREF9628_00142	Phage gp6-like head-tail connector protein	NA
UHGV-0148065_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0148065_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0148065_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0148065_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148065_18	UniRef90	UniRef90_UPI0009306DB3	phage major capsid protein	NA
UHGV-0148065_18	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0148065_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148065_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148065_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148065_19	KOfam	K06904	NA	NA
UHGV-0148065_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0148065_19	UniRef90	UniRef90_UPI0009313360	HK97 family phage prohead protease	NA
UHGV-0148065_19	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-0148065_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0148065_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0148065_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0148065_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148065_20	UniRef90	UniRef90_UPI000E0C8FF8	phage portal protein	NA
UHGV-0148065_20	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0148065_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148065_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148065_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148065_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148065_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148065_21	UniRef90	UniRef90_UPI000AD5179C	terminase large subunit	NA
UHGV-0148065_21	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-0148065_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148065_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148065_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148065_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148065_22	PHROG	phrog_13845	NA	unknown function
UHGV-0148065_22	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0148065_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148065_23	UniRef90	UniRef90_A0A371AT85	HNH endonuclease	NA
UHGV-0148065_23	eggNOG-mapper	66692.ABC1327	HNH endonuclease	NA
UHGV-0148065_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0148065_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148065_36	UniRef90	UniRef90_UPI001A470AE5	med21 domain-containing protein	NA
UHGV-0148065_36	eggNOG-mapper	562981.HMPREF0428_00991	NA	NA
UHGV-0148065_36	Structural annotation	PF20432, NF040507, COG2944	NA	NA
UHGV-0148065_37	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-0148065_37	UniRef90	UniRef90_UPI00191BAA6B	DNA methyltransferase	NA
UHGV-0148065_37	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0148065_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148065_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0148065_37	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0148065_38	UniRef90	UniRef90_UPI000403EAB4	NA	NA
UHGV-0148065_41	PHROG	phrog_98	NA	unknown function
UHGV-0148065_41	UniRef90	UniRef90_A0A6H1F3Q6	YopX domain-containing protein	NA
UHGV-0148065_41	eggNOG-mapper	562981.HMPREF0428_00992	YopX protein	NA
UHGV-0148065_41	Pfam	PF09643	YopX protein	YopX
UHGV-0148065_41	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0148065_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0148065_42	PHROG	phrog_1691	NA	unknown function
UHGV-0148065_42	UniRef90	UniRef90_A0A1X7QKM8	Putative prophage lcu4 related protein	NA
UHGV-0148065_42	eggNOG-mapper	278197.PEPE_0774	NA	NA
UHGV-0148065_43	Structural annotation	TIGR02338	NA	NA
UHGV-0148065_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148065_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148065_49	UniRef90	UniRef90_A0A134A0C7	Single-stranded DNA-binding protein	NA
UHGV-0148065_49	eggNOG-mapper	1321820.HMPREF1983_00947	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0148065_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148065_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0148065_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148065_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148065_49	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0148065_50	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0148065_50	PHROG	phrog_216	integrase	integration and excision
UHGV-0148065_50	UniRef90	UniRef90_U2Q4Z2	Site-specific recombinase, phage integrase family	NA
UHGV-0148065_50	eggNOG-mapper	1321820.HMPREF1983_00948	Phage integrase family	NA
UHGV-0148065_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148065_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148065_50	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0148065_51	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0148065_51	UniRef90	UniRef90_UPI00083559E8	NA	NA
UHGV-0148065_51	eggNOG-mapper	1321820.HMPREF1983_00949	DnaD domain protein	NA
UHGV-0148065_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0148065_51	Structural annotation	PF19481, PF02002, TIGR01889, COG0640	NA	NA
UHGV-0148065_52	PHROG	phrog_98	NA	unknown function
UHGV-0148065_52	UniRef90	UniRef90_A0A134A0C4	YopX domain-containing protein	NA
UHGV-0148065_52	eggNOG-mapper	1220589.CD32_00355	YopX protein	NA
UHGV-0148065_52	Pfam	PF09643	YopX protein	YopX
UHGV-0148065_56	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0148065_56	UniRef90	UniRef90_UPI00135B4524	MazG-like family protein	NA
UHGV-0148065_56	eggNOG-mapper	562981.HMPREF0428_01854	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0148065_56	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0148065_56	Structural annotation	PF08761, MF_01020, NF007113, COG4508	NA	NA
UHGV-0148065_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148065_65	UniRef90	UniRef90_UPI001238B059	helix-turn-helix domain-containing protein	NA
UHGV-0148065_65	eggNOG-mapper	1321820.HMPREF1983_00957	DNA-binding helix-turn-helix protein	NA
UHGV-0148065_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148065_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148065_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0148065_66	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0148065_66	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0148065_66	UniRef90	UniRef90_A0A0X8KN62	HTH cro/C1-type domain-containing protein	NA
UHGV-0148065_66	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148065_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148065_66	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0148065_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0148065_66	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0148065_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148065_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0148065_67	UniRef90	UniRef90_A0A6H1F166	Recombinase family protein	NA
UHGV-0148065_67	eggNOG-mapper	562981.HMPREF0428_01017	Resolvase, N terminal domain	NA
UHGV-0148065_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148065_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0148065_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148065_67	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA