UHGV-0148103

Genome information

Genome length 36,618 bps

CDS count 52

Completeness 96.27% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148103
vOTU ID	vOTU-069051
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_395972
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.04
Jumbo phage	No

Genome content
Genome length	36,618 bps
GC content	42.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.22%
Average CDS length	637.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148103_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148103_1	PHROG	phrog_833	endolysin	lysis
UHGV-0148103_1	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0148103_1	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0148103_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0148103_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0148103_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0148103_2	PHROG	phrog_1048	NA	unknown function
UHGV-0148103_2	UniRef90	UniRef90_UPI001E4F489A	NA	NA
UHGV-0148103_2	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0148103_2	Pfam	PF11195	NA	DUF2829
UHGV-0148103_2	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0148103_2	Structural annotation	PF11195	NA	NA
UHGV-0148103_3	PHROG	phrog_199	holin	lysis
UHGV-0148103_3	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0148103_3	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0148103_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0148103_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0148103_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0148103_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0148103_4	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0148103_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0148103_4	UniRef90	UniRef90_UPI001D040907	collagen-like protein	NA
UHGV-0148103_4	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0148103_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0148103_4	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0148103_4	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0148103_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0148103_5	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0148103_5	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0148103_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0148103_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0148103_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148103_5	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0148103_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0148103_6	UniRef90	UniRef90_A0A174ADB2	Phage-related protein	NA
UHGV-0148103_6	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0148103_6	COG	COG1511	NA	NA
UHGV-0148103_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0148103_7	PHROG	phrog_706	NA	unknown function
UHGV-0148103_7	UniRef90	UniRef90_UPI00129D4CEC	Gp15 family bacteriophage protein	NA
UHGV-0148103_7	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0148103_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0148103_7	Structural annotation	PF06854	NA	NA
UHGV-0148103_8	PHROG	phrog_4450	NA	unknown function
UHGV-0148103_8	UniRef90	UniRef90_UPI001F2808D2	AP endonuclease	NA
UHGV-0148103_8	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0148103_8	Pfam	PF20378	NA	DUF6673
UHGV-0148103_8	Structural annotation	PF20378	NA	NA
UHGV-0148103_9	PHROG	phrog_3099	NA	unknown function
UHGV-0148103_9	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0148103_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0148103_10	PHROG	phrog_3266	tail completion	connector
UHGV-0148103_10	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0148103_10	Structural annotation	PF12691	NA	NA
UHGV-0148103_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0148103_11	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0148103_11	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0148103_11	Structural annotation	PF11114	NA	NA
UHGV-0148103_12	PHROG	phrog_3366	NA	unknown function
UHGV-0148103_12	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0148103_12	Pfam	PF20536	NA	DUF6751
UHGV-0148103_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0148103_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0148103_13	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0148103_14	UniRef90	UniRef90_UPI00156FBED9	head fiber protein	NA
UHGV-0148103_14	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0148103_14	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0148103_14	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0148103_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0148103_15	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0148103_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0148103_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0148103_16	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0148103_16	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0148103_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0148103_16	Structural annotation	PF06810	NA	NA
UHGV-0148103_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0148103_17	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0148103_17	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0148103_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0148103_17	COG	COG2369	NA	NA
UHGV-0148103_17	Structural annotation	PF06152	NA	NA
UHGV-0148103_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0148103_18	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0148103_18	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0148103_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0148103_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148103_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0148103_19	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0148103_19	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0148103_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0148103_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0148103_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148103_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0148103_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0148103_20	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0148103_20	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0148103_20	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0148103_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0148103_20	Structural annotation	PF07141	NA	NA
UHGV-0148103_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148103_21	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0148103_21	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0148103_21	Structural annotation	PF02996	NA	NA
UHGV-0148103_24	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0148103_26	UniRef90	UniRef90_A0A2N5PKF4	NA	NA
UHGV-0148103_26	Pfam	PF04448	NA	DUF551
UHGV-0148103_26	Structural annotation	PF04448	NA	NA
UHGV-0148103_27	Structural annotation	PF02895	NA	NA
UHGV-0148103_31	PHROG	phrog_10714	NA	unknown function
UHGV-0148103_31	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0148103_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0148103_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0148103_33	UniRef90	UniRef90_A0A6N3DEG0	PAPS_reduct domain-containing protein	NA
UHGV-0148103_33	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0148103_33	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0148103_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0148103_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0148103_33	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0148103_35	PHROG	phrog_25488	NA	unknown function
UHGV-0148103_35	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0148103_36	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0148103_36	UniRef90	UniRef90_A0A2N5PKG2	Phage_rep_org_N domain-containing protein	NA
UHGV-0148103_36	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0148103_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0148103_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0148103_36	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0148103_37	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148103_37	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0148103_37	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0148103_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148103_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148103_38	UniRef90	UniRef90_A0A2N5PKE3	Single-stranded DNA-binding protein	NA
UHGV-0148103_38	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0148103_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148103_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0148103_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148103_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148103_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0148103_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0148103_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148103_39	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0148103_39	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0148103_39	Pfam	PF03837	RecT family	RecT
UHGV-0148103_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0148103_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0148103_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0148103_41	PHROG	phrog_674	NA	unknown function
UHGV-0148103_41	UniRef90	UniRef90_UPI000462FA44	NA	NA
UHGV-0148103_41	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0148103_41	Pfam	PF07083	NA	DUF1351
UHGV-0148103_41	Structural annotation	PF07083	NA	NA
UHGV-0148103_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148103_42	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0148103_42	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0148103_42	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0148103_42	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0148103_42	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0148103_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0148103_45	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0148103_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148103_46	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0148103_46	UniRef90	UniRef90_UPI0015706F54	phage regulatory protein/antirepressor Ant	NA
UHGV-0148103_46	eggNOG-mapper	262071.A3QSE0_9CAUD	DNA binding	NA
UHGV-0148103_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0148103_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148103_46	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0148103_46	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0148103_47	PHROG	phrog_28292	NA	unknown function
UHGV-0148103_47	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0148103_47	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0148103_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148103_49	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0148103_49	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0148103_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0148103_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148103_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148103_50	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0148103_50	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0148103_51	PHROG	phrog_7115	NA	unknown function
UHGV-0148103_51	UniRef90	UniRef90_UPI001CD3F351	PH domain-containing protein	NA
UHGV-0148103_51	eggNOG-mapper	471855.Shel_11460	Bacterial PH domain	NA
UHGV-0148103_51	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0148103_51	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0148103_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148103_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0148103_52	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0148103_52	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0148103_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148103_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0148103_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148103_52	Structural annotation	PF00239, NF041201, COG1961	NA	NA