UHGV-0148291

Genome information

Genome length 35,747 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148291
vOTU ID	vOTU-046111
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_418229
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49
Jumbo phage	No

Genome content
Genome length	35,747 bps
GC content	40.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.07%
Average CDS length	637.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148291_1	PHROG	phrog_17658	NA	unknown function
UHGV-0148291_1	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-0148291_3	PHROG	phrog_88	major tail protein	tail
UHGV-0148291_3	UniRef90	UniRef90_A0A239AJE2	Phage major tail protein, phi13 family	NA
UHGV-0148291_3	eggNOG-mapper	935948.KE386495_gene1328	NA	NA
UHGV-0148291_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0148291_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0148291_4	PHROG	phrog_78	tail terminator	connector
UHGV-0148291_4	eggNOG-mapper	1280689.AUJC01000003_gene971	NA	NA
UHGV-0148291_4	Structural annotation	PF05657	NA	NA
UHGV-0148291_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0148291_5	UniRef90	UniRef90_UPI000A1CA9BD	HK97 gp10 family phage protein	NA
UHGV-0148291_5	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0148291_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148291_5	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0148291_6	PHROG	phrog_2168	NA	unknown function
UHGV-0148291_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0148291_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0148291_7	eggNOG-mapper	1280689.AUJC01000003_gene968	Phage gp6-like head-tail connector protein	NA
UHGV-0148291_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0148291_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0148291_8	eggNOG-mapper	1288079.AUKN01000006_gene3148	NA	NA
UHGV-0148291_9	PHROG	phrog_212	major head protein	head and packaging
UHGV-0148291_9	UniRef90	UniRef90_UPI0019CFEAB4	phage capsid protein	NA
UHGV-0148291_9	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0148291_9	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0148291_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0148291_10	UniRef90	UniRef90_UPI00196777AF	phage scaffolding protein	NA
UHGV-0148291_10	eggNOG-mapper	743719.PaelaDRAFT_2399	Phage minor structural protein GP20	NA
UHGV-0148291_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0148291_10	Structural annotation	PF06810	NA	NA
UHGV-0148291_11	UniRef90	UniRef90_A0A4R2P410	YjcQ protein	NA
UHGV-0148291_11	eggNOG-mapper	1280692.AUJL01000004_gene857	YjcQ protein	NA
UHGV-0148291_11	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0148291_11	Structural annotation	PF09639, TIGR02702, COG2345	NA	NA
UHGV-0148291_12	PHROG	phrog_3711	NA	unknown function
UHGV-0148291_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0148291_13	UniRef90	UniRef90_UPI001C11FEDD	minor capsid protein	NA
UHGV-0148291_13	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0148291_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0148291_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0148291_13	COG	COG2369	NA	NA
UHGV-0148291_13	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0148291_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0148291_14	UniRef90	UniRef90_UPI001C10F7D9	phage portal protein	NA
UHGV-0148291_14	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148291_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0148291_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0148291_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0148291_15	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0148291_15	UniRef90	UniRef90_UPI0015B49608	phage terminase large subunit	NA
UHGV-0148291_15	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0148291_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0148291_15	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0148291_15	COG	COG5410	NA	NA
UHGV-0148291_15	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0148291_16	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0148291_16	UniRef90	UniRef90_A0A1S5S8W6	Putative HNH endonuclease	NA
UHGV-0148291_16	eggNOG-mapper	357809.Cphy_2972	transposase activity	NA
UHGV-0148291_16	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0148291_16	Structural annotation	PF13022	NA	NA
UHGV-0148291_18	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148291_18	UniRef90	UniRef90_A0A7X9EDH9	Metallophos domain-containing protein	NA
UHGV-0148291_18	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0148291_18	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0148291_18	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0148291_18	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0148291_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148291_19	UniRef90	UniRef90_A0A348ZBT0	RNA_pol_sigma70 domain-containing protein	NA
UHGV-0148291_19	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-0148291_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0148291_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0148291_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0148291_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148291_22	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0148291_22	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0148291_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0148291_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0148291_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0148291_23	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0148291_23	UniRef90	UniRef90_UPI000DD06519	site-specific DNA-methyltransferase	NA
UHGV-0148291_23	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0148291_23	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0148291_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0148291_23	COG	COG0863	DNA modification methylase	NA
UHGV-0148291_23	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0148291_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148291_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148291_24	UniRef90	UniRef90_UPI001C1005D2	single-stranded DNA-binding protein	NA
UHGV-0148291_24	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0148291_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148291_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0148291_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148291_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148291_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0148291_27	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0148291_27	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0148291_27	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0148291_27	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0148291_27	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0148291_27	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0148291_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0148291_27	Structural annotation	PF07261, PF09681, MF_01177, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-0148291_28	PHROG	phrog_2113	NA	unknown function
UHGV-0148291_28	Structural annotation	PF21715	NA	NA
UHGV-0148291_29	PHROG	phrog_7566	NA	unknown function
UHGV-0148291_29	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0148291_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0148291_30	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0148291_30	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0148291_31	PHROG	phrog_14970	NA	unknown function
UHGV-0148291_31	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0148291_31	eggNOG-mapper	1226322.HMPREF1545_04073	double-strand break repair protein	NA
UHGV-0148291_31	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0148291_31	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0148291_36	UniRef90	UniRef90_UPI0011C98975	NA	NA
UHGV-0148291_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148291_36	Structural annotation	PF05339, NF041575, COG3655	NA	NA
UHGV-0148291_37	UniRef90	UniRef90_UPI00148B1667	zinc-ribbon domain-containing protein	NA
UHGV-0148291_37	Structural annotation	PF13248	NA	NA
UHGV-0148291_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0148291_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148291_39	UniRef90	UniRef90_A0A416D4N5	XRE family transcriptional regulator	NA
UHGV-0148291_39	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0148291_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148291_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0148291_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0148291_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0148291_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0148291_40	UniRef90	UniRef90_A7VTE0	LexA family transcriptional regulator	NA
UHGV-0148291_40	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0148291_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148291_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0148291_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0148291_40	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0148291_41	UniRef90	UniRef90_UPI0002DB73A7	NA	NA
UHGV-0148291_41	eggNOG-mapper	986075.CathTA2_1209	serine threonine protein kinase	NA
UHGV-0148291_41	AcrCatalog	cluster_71895	NA	NA
UHGV-0148291_41	Pfam	PF02493	MORN repeat	MORN
UHGV-0148291_41	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0148291_42	KOfam	K14059	int; integrase	NA
UHGV-0148291_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0148291_42	UniRef90	UniRef90_R7KSI7	Putative integrase	NA
UHGV-0148291_42	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0148291_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148291_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148291_42	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0148291_43	eggNOG-mapper	720554.Clocl_2739	NA	NA
UHGV-0148291_44	PHROG	phrog_9125	NA	unknown function
UHGV-0148291_44	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0148291_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148291_45	PHROG	phrog_435	endolysin	lysis
UHGV-0148291_45	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148291_45	eggNOG-mapper	180332.JTGN01000006_gene3159	Ami_3	NA
UHGV-0148291_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0148291_45	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0148291_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148291_45	Structural annotation	PF01520, PF09992, MF_00562, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0148291_46	PHROG	phrog_1129	holin	lysis
UHGV-0148291_46	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0148291_46	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0148291_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0148291_46	Structural annotation	PF06946	NA	NA
UHGV-0148291_47	PHROG	phrog_937	hemolysin	other
UHGV-0148291_49	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0148291_51	PHROG	phrog_538	minor tail protein	tail
UHGV-0148291_51	UniRef90	UniRef90_B7GIP2	Phage related protein	NA
UHGV-0148291_51	eggNOG-mapper	491915.Aflv_0677	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0148291_51	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0148291_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0148291_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0148291_52	UniRef90	UniRef90_UPI001784C83A	phage tail family protein	NA
UHGV-0148291_52	eggNOG-mapper	1209989.TepiRe1_2592	PFAM Phage tail protein	NA
UHGV-0148291_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0148291_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148291_52	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0148291_53	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0148291_53	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0148291_53	UniRef90	UniRef90_UPI000A1CB42B	tape measure protein	NA
UHGV-0148291_53	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-0148291_53	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0148291_53	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0148291_53	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA