UHGV-0148346

Genome information

Genome length 39,480 bps

CDS count 53

Completeness 96.83% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148346
vOTU ID	vOTU-065479
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434797
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.96
Jumbo phage	No

Genome content
Genome length	39,480 bps
GC content	28.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.84%
Average CDS length	679.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148346_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0148346_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148346_1	UniRef90	UniRef90_A0A1I3QJN8	HNH endonuclease	NA
UHGV-0148346_1	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0148346_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0148346_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148346_3	PHROG	phrog_9079	NA	unknown function
UHGV-0148346_3	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0148346_3	Structural annotation	TIGR04550	NA	NA
UHGV-0148346_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148346_4	UniRef90	UniRef90_UPI0007BBAD29	transcriptional regulator	NA
UHGV-0148346_4	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-0148346_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0148346_4	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0148346_5	PHROG	phrog_98	NA	unknown function
UHGV-0148346_5	UniRef90	UniRef90_UPI000574D15D	YopX family protein	NA
UHGV-0148346_5	eggNOG-mapper	545697.HMPREF0216_02825	YopX protein	NA
UHGV-0148346_5	Pfam	PF09643	YopX protein	YopX
UHGV-0148346_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0148346_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0148346_8	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0148346_8	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0148346_8	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0148346_8	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0148346_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0148346_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0148346_9	UniRef90	UniRef90_A0A8F1W6A8	Class V aminotransferase	NA
UHGV-0148346_9	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0148346_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0148346_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0148346_9	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0148346_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148346_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148346_12	UniRef90	UniRef90_UPI0011060A1D	single-stranded DNA-binding protein	NA
UHGV-0148346_12	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0148346_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148346_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0148346_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148346_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148346_12	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0148346_15	PHROG	phrog_5164	NA	unknown function
UHGV-0148346_15	Structural annotation	PF06892	NA	NA
UHGV-0148346_18	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0148346_18	UniRef90	UniRef90_A0A8F1W4U6	Rha family transcriptional regulator	NA
UHGV-0148346_18	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0148346_18	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0148346_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148346_18	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0148346_18	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0148346_19	PHROG	phrog_1974	NA	unknown function
UHGV-0148346_19	UniRef90	UniRef90_A0A371ISD9	Nucleoid-associated protein	NA
UHGV-0148346_19	eggNOG-mapper	1301100.HG529375_gene4038	37-kD nucleoid-associated bacterial protein	NA
UHGV-0148346_19	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0148346_19	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0148346_19	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0148346_20	PHROG	phrog_824	NA	unknown function
UHGV-0148346_20	UniRef90	UniRef90_UPI001105A33E	VRR-NUC domain-containing protein	NA
UHGV-0148346_20	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0148346_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0148346_21	PHROG	phrog_1455	NA	unknown function
UHGV-0148346_21	eggNOG-mapper	445335.CBN_3005	NA	NA
UHGV-0148346_21	Pfam	PF21793	NA	DUF6877
UHGV-0148346_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148346_22	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0148346_22	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0148346_22	Structural annotation	PF21578	NA	NA
UHGV-0148346_24	UniRef90	UniRef90_UPI001105B88F	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0148346_24	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0148346_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148346_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0148346_28	UniRef90	UniRef90_UPI0011061316	helix-turn-helix domain-containing protein	NA
UHGV-0148346_28	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148346_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148346_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148346_28	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0148346_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0148346_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0148346_30	UniRef90	UniRef90_UPI0011069CE3	helix-turn-helix domain-containing protein	NA
UHGV-0148346_30	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148346_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148346_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0148346_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148346_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0148346_31	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0148346_31	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0148346_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148346_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0148346_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0148346_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148346_31	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0148346_32	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0148346_32	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0148346_32	UniRef90	UniRef90_A0A174PGV9	Septum-associated FtsK-like translocase of DNA	NA
UHGV-0148346_32	eggNOG-mapper	1463900.JOIX01000030_gene4772	NA	NA
UHGV-0148346_32	PADLOC	SspH_00004	SspH	SSP
UHGV-0148346_32	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0148346_32	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0148346_32	Structural annotation	PF01580, MF_01836, NF041214, COG0433	NA	NA
UHGV-0148346_33	PHROG	phrog_9996	NA	unknown function
UHGV-0148346_33	UniRef90	UniRef90_UPI0011071500	replication-relaxation family protein	NA
UHGV-0148346_33	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0148346_33	Structural annotation	PF13814, MF_01819, NF041423, COG1733	NA	NA
UHGV-0148346_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148346_34	PHROG	phrog_435	endolysin	lysis
UHGV-0148346_34	UniRef90	UniRef90_UPI001106ED5F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148346_34	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0148346_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0148346_34	Pfam	PF19087	NA	DUF5776
UHGV-0148346_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148346_34	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0148346_35	UniRef90	UniRef90_A0A1L8MK41	Phage holin	NA
UHGV-0148346_35	eggNOG-mapper	272626.lin1702	Bacteriophage holin	NA
UHGV-0148346_35	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0148346_35	COG	COG5546	NA	NA
UHGV-0148346_36	PHROG	phrog_1193	hemolysin	other
UHGV-0148346_36	UniRef90	UniRef90_UPI0018AB0AA6	hemolysin XhlA family protein	NA
UHGV-0148346_36	eggNOG-mapper	445335.CBN_3060	Haemolysin XhlA	NA
UHGV-0148346_36	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0148346_37	KOfam	K16559	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	NA
UHGV-0148346_37	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0148346_37	eggNOG-mapper	641107.CDLVIII_5500	Putative cell wall binding repeat	NA
UHGV-0148346_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0148346_37	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-0148346_37	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0148346_37	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0148346_38	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0148346_38	PHROG	phrog_7043	tail protein	tail
UHGV-0148346_38	UniRef90	UniRef90_UPI0011CA3AC4	SH3 domain-containing protein	NA
UHGV-0148346_38	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0148346_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0148346_38	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0148346_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0148346_38	COG	COG4926	Phage-related protein	NA
UHGV-0148346_38	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0148346_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0148346_39	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0148346_39	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0148346_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148346_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0148346_40	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0148346_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0148346_40	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0148346_40	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0148346_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0148346_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0148346_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0148346_41	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0148346_42	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0148346_42	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0148346_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0148346_43	PHROG	phrog_5509	neck protein	connector
UHGV-0148346_43	eggNOG-mapper	936140.AEOT01000014_gene1361	NA	NA
UHGV-0148346_43	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0148346_44	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0148346_45	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0148346_45	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0148346_45	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0148346_45	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0148346_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148346_46	PHROG	phrog_749	NA	unknown function
UHGV-0148346_46	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0148346_46	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-0148346_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148346_47	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0148346_47	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0148346_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148346_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148346_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148346_47	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148346_48	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0148346_48	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0148346_48	UniRef90	UniRef90_UPI00110724D9	Clp protease ClpP	NA
UHGV-0148346_48	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0148346_48	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0148346_48	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0148346_48	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0148346_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148346_49	UniRef90	UniRef90_A0A1I3QGY1	Phage portal protein, HK97 family	NA
UHGV-0148346_49	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0148346_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148346_49	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148346_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148346_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148346_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148346_50	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0148346_50	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0148346_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148346_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148346_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148346_50	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148346_51	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148346_51	UniRef90	UniRef90_UPI001ABAEA39	GIY-YIG nuclease family protein	NA
UHGV-0148346_51	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0148346_51	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0148346_51	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0148346_51	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0148346_51	Structural annotation	PF19835, PF07460, PF20987, TIGR01453	NA	NA
UHGV-0148346_52	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0148346_52	UniRef90	UniRef90_UPI001E64C17F	P27 family phage terminase small subunit	NA
UHGV-0148346_52	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0148346_52	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148346_52	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA