UHGV-0148363

Genome information

Genome length 40,843 bps

CDS count 67

Completeness 96.92% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148363
vOTU ID	vOTU-074439
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414808
BioSample	SAMN05414974
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.7
Jumbo phage	No

Genome content
Genome length	40,843 bps
GC content	53.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.01%
Average CDS length	551.46 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148363_1	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0148363_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148363_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148363_1	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148363_4	PHROG	phrog_888	NA	unknown function
UHGV-0148363_4	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0148363_4	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0148363_4	Pfam	PF14471	NA	DUF4428
UHGV-0148363_4	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0148363_4	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0148363_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0148363_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148363_6	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0148363_6	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0148363_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148363_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148363_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148363_7	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0148363_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148363_11	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0148363_11	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0148363_11	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0148363_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0148363_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148363_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0148363_11	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0148363_11	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0148363_12	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0148363_12	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0148363_13	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0148363_14	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0148363_15	PHROG	phrog_674	NA	unknown function
UHGV-0148363_15	UniRef90	UniRef90_A0A3E2UDL3	NA	NA
UHGV-0148363_15	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-0148363_15	Pfam	PF07083	NA	DUF1351
UHGV-0148363_15	Structural annotation	PF07083	NA	NA
UHGV-0148363_16	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148363_16	UniRef90	UniRef90_A0A3E2UDI4	Phage recombination protein Bet	NA
UHGV-0148363_16	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0148363_16	Pfam	PF03837	RecT family	RecT
UHGV-0148363_16	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0148363_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0148363_16	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0148363_17	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0148363_18	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0148363_18	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0148363_18	UniRef90	UniRef90_UPI001CBE9731	DnaD domain protein	NA
UHGV-0148363_18	eggNOG-mapper	447909.A6M985_9VIRU	calcium ion binding	NA
UHGV-0148363_18	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0148363_18	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0148363_18	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0148363_19	Structural annotation	PF11417	NA	NA
UHGV-0148363_21	PHROG	phrog_3136	NA	unknown function
UHGV-0148363_21	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0148363_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148363_21	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0148363_22	Structural annotation	TIGR04165	NA	NA
UHGV-0148363_25	PHROG	phrog_6568	NA	unknown function
UHGV-0148363_25	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0148363_27	PHROG	phrog_3253	NA	unknown function
UHGV-0148363_27	UniRef90	UniRef90_UPI001C032A7B	resolvase	NA
UHGV-0148363_27	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0148363_27	Structural annotation	PF18618	NA	NA
UHGV-0148363_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-0148363_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148363_28	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0148363_28	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0148363_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-0148363_28	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0148363_28	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0148363_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148363_29	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0148363_30	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0148363_30	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0148363_30	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0148363_30	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0148363_30	Structural annotation	PF16677	NA	NA
UHGV-0148363_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148363_31	PHROG	phrog_10250	NA	unknown function
UHGV-0148363_31	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0148363_31	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0148363_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0148363_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0148363_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148363_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0148363_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0148363_32	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0148363_32	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0148363_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0148363_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0148363_33	PHROG	phrog_21498	NA	unknown function
UHGV-0148363_33	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0148363_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0148363_33	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0148363_34	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0148363_34	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0148363_34	eggNOG-mapper	1443125.Z962_05660	Phage Mu protein F like protein	NA
UHGV-0148363_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0148363_34	COG	COG2369	NA	NA
UHGV-0148363_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0148363_36	PHROG	phrog_8680	NA	unknown function
UHGV-0148363_36	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0148363_36	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0148363_36	Pfam	PF14386	NA	DUF4417
UHGV-0148363_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0148363_36	Structural annotation	PF14386	NA	NA
UHGV-0148363_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0148363_38	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0148363_38	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0148363_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148363_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0148363_40	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0148363_40	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0148363_40	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0148363_41	Structural annotation	PF06810	NA	NA
UHGV-0148363_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-0148363_42	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0148363_42	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0148363_42	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0148363_44	PHROG	phrog_17977	NA	unknown function
UHGV-0148363_44	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0148363_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0148363_45	Structural annotation	PF13554	NA	NA
UHGV-0148363_46	PHROG	phrog_885	major tail protein	tail
UHGV-0148363_46	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0148363_46	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0148363_46	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0148363_46	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0148363_49	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0148363_49	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0148363_49	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0148363_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0148363_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0148363_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0148363_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0148363_50	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0148363_50	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0148363_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148363_50	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0148363_51	PHROG	phrog_3558	tail protein	tail
UHGV-0148363_51	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0148363_51	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0148363_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0148363_51	COG	COG4926	Phage-related protein	NA
UHGV-0148363_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0148363_52	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0148363_52	PHROG	phrog_7158	NA	unknown function
UHGV-0148363_52	eggNOG-mapper	862514.HMPREF0623_0302	Calcineurin-like phosphoesterase	NA
UHGV-0148363_52	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0148363_52	Structural annotation	PF14582, MF_00905, NF008359, COG5555	NA	NA
UHGV-0148363_53	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0148363_53	COG	COG3108	NA	NA
UHGV-0148363_54	KOfam	K07273	acm; lysozyme	NA
UHGV-0148363_54	PHROG	phrog_291	endolysin	lysis
UHGV-0148363_54	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0148363_54	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0148363_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148363_54	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148363_54	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0148363_56	PHROG	phrog_15303	NA	unknown function
UHGV-0148363_58	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0148363_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148363_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0148363_58	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0148363_60	PHROG	phrog_3754	NA	unknown function
UHGV-0148363_60	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0148363_61	PHROG	phrog_21718	NA	unknown function
UHGV-0148363_61	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0148363_62	PHROG	phrog_22984	NA	unknown function
UHGV-0148363_63	PHROG	phrog_16490	NA	unknown function
UHGV-0148363_63	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0148363_64	PHROG	phrog_20016	NA	unknown function
UHGV-0148363_64	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0148363_64	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0148363_64	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0148363_65	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0148363_65	Structural annotation	PF12510	NA	NA
UHGV-0148363_67	KOfam	K00048	fucO; lactaldehyde reductase [EC:1.1.1.77]	NA
UHGV-0148363_67	UniRef90	UniRef90_UPI0008DAB575	iron-containing alcohol dehydrogenase	NA
UHGV-0148363_67	eggNOG-mapper	411483.FAEPRAA2165_01852	NA	NA
UHGV-0148363_67	COG	COG1454	Alcohol dehydrogenase, class IV	NA