UHGV-0148369

Genome information

Genome length 49,131 bps

CDS count 91

Completeness 53.04% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148369
vOTU ID	vOTU-018133
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414810
BioSample	SAMN05414974
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47
Jumbo phage	No

Genome content
Genome length	49,131 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	91.60%
Average CDS length	498.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148369_1	UniRef90	UniRef90_A0A3D5TQQ2	HTH cro/C1-type domain-containing protein	NA
UHGV-0148369_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148369_1	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0148369_5	PHROG	phrog_4273	NA	unknown function
UHGV-0148369_7	Structural annotation	PF02246	NA	NA
UHGV-0148369_9	PHROG	phrog_30930	NA	unknown function
UHGV-0148369_9	UniRef90	UniRef90_D2BQD3	NA	NA
UHGV-0148369_9	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0148369_14	Pfam	PF18129	Xrn1 SH3-like domain	SH3_12
UHGV-0148369_14	Structural annotation	PF18129, MF_00369, NF002745, COG2139	NA	NA
UHGV-0148369_15	eggNOG-mapper	742733.HMPREF9469_00925	NA	NA
UHGV-0148369_15	Structural annotation	PF14445	NA	NA
UHGV-0148369_16	KOfam	K01258	pepT; tripeptide aminopeptidase [EC:3.4.11.4]	NA
UHGV-0148369_16	PHROG	phrog_34186	NA	unknown function
UHGV-0148369_16	UniRef90	UniRef90_H1CDP0	Peptidase_M28 domain-containing protein	NA
UHGV-0148369_16	eggNOG-mapper	411467.BACCAP_03129	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	NA
UHGV-0148369_16	Pfam	PF05343	M42 glutamyl aminopeptidase	Peptidase_M42
UHGV-0148369_16	COG	COG0624	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	NA
UHGV-0148369_16	Structural annotation	PF05343, MF_01120, NF040822, COG1363	NA	NA
UHGV-0148369_17	eggNOG-mapper	1203606.HMPREF1526_00296	NA	NA
UHGV-0148369_17	Structural annotation	PF09465, MF_00948, TIGR00922, COG0250	NA	NA
UHGV-0148369_18	PHROG	phrog_21047	NA	unknown function
UHGV-0148369_18	eggNOG-mapper	1384065.JAGS01000005_gene3323	NA	NA
UHGV-0148369_19	PHROG	phrog_12644	NA	unknown function
UHGV-0148369_19	UniRef90	UniRef90_A0A1M7MHE5	NA	NA
UHGV-0148369_19	eggNOG-mapper	697329.Rumal_1388	NA	NA
UHGV-0148369_19	Pfam	PF18406	Ferredoxin-like domain in Api92-like protein	DUF1281_C
UHGV-0148369_20	UniRef90	UniRef90_F6CGR6	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0148369_20	eggNOG-mapper	498761.HM1_0045	NA	NA
UHGV-0148369_29	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0148369_29	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0148369_29	UniRef90	UniRef90_UPI00096F7BA3	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0148369_29	eggNOG-mapper	1121423.JONT01000006_gene2405	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0148369_29	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0148369_29	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0148369_29	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0148369_31	COG	COG0092	Ribosomal protein S3	NA
UHGV-0148369_34	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0148369_34	PHROG	phrog_216	integrase	integration and excision
UHGV-0148369_34	UniRef90	UniRef90_A0A011VVE0	Tyr recombinase domain-containing protein	NA
UHGV-0148369_34	eggNOG-mapper	1540257.JQMW01000009_gene3749	integrase family	NA
UHGV-0148369_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148369_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148369_34	Structural annotation	PF00589, MF_01808, NF007371, COG4974	NA	NA
UHGV-0148369_37	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0148369_37	PHROG	phrog_19349	NA	unknown function
UHGV-0148369_37	UniRef90	UniRef90_C0DAL0	Transglycosylase SLT domain protein	NA
UHGV-0148369_37	eggNOG-mapper	1120746.CCNL01000011_gene1661	lytic transglycosylase activity	NA
UHGV-0148369_37	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0148369_37	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0148369_37	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0148369_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148369_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0148369_40	UniRef90	UniRef90_A0A4Z0Y7G0	Phage antirepressor protein KilAC domain protein	NA
UHGV-0148369_40	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0148369_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0148369_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148369_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0148369_40	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0148369_42	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0148369_42	UniRef90	UniRef90_A0A1C0AG94	NAD(P)-dependent oxidoreductase	NA
UHGV-0148369_42	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0148369_42	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0148369_42	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0148369_43	KOfam	K07496	K07496; putative transposase	NA
UHGV-0148369_43	PHROG	phrog_506	transposase	integration and excision
UHGV-0148369_43	UniRef90	UniRef90_A0A084J8Z1	Transposase	NA
UHGV-0148369_43	eggNOG-mapper	1094980.Mpsy_1388	Probable transposase	NA
UHGV-0148369_43	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0148369_43	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0148369_43	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0148369_43	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0148369_43	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0148369_43	COG	COG0675	Transposase	NA
UHGV-0148369_43	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0148369_44	KOfam	K14680	E6.5.1.3; RNA ligase [EC:6.5.1.3]	NA
UHGV-0148369_44	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0148369_44	UniRef90	UniRef90_A0A7X2N4V7	AAA family ATPase	NA
UHGV-0148369_44	eggNOG-mapper	411474.COPEUT_00782	AAA domain	NA
UHGV-0148369_44	Pfam	PF13671	AAA domain	AAA_33
UHGV-0148369_44	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0148369_44	Pfam	PF09511	RNA ligase	RNA_lig_T4_1
UHGV-0148369_44	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0148369_44	Structural annotation	PF09511, PF13671, MF_04149, MF_01443, MF_03171, TIGR04075, COG5324, COG4639, COG2129	NA	NA
UHGV-0148369_46	PHROG	phrog_1366	NA	unknown function
UHGV-0148369_46	UniRef90	UniRef90_A0A7X9GKV1	AAA family ATPase	NA
UHGV-0148369_46	eggNOG-mapper	1070319.CAGGBEG34_610005	AAA domain	NA
UHGV-0148369_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-0148369_46	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0148369_46	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0148369_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148369_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148369_47	UniRef90	UniRef90_UPI00047AE4A6	single-stranded DNA-binding protein	NA
UHGV-0148369_47	eggNOG-mapper	1121087.AUCK01000002_gene2461	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0148369_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148369_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0148369_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148369_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148369_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0148369_48	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0148369_48	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148369_48	UniRef90	UniRef90_UPI001C0FBAF3	PD-(D/E)XK nuclease family protein	NA
UHGV-0148369_48	eggNOG-mapper	397291.C804_00923	PD-(D/E)XK nuclease superfamily	NA
UHGV-0148369_48	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0148369_48	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0148369_49	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0148369_49	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0148369_49	UniRef90	UniRef90_A0A6N9P2Z3	Toprim domain-containing protein	NA
UHGV-0148369_49	eggNOG-mapper	247490.KSU1_C0210	Participates in initiation and elongation during chromosome replication	NA
UHGV-0148369_49	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0148369_49	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0148369_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0148369_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0148369_49	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0148369_50	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0148369_50	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0148369_50	UniRef90	UniRef90_UPI0018AAE723	PHP domain-containing protein	NA
UHGV-0148369_50	eggNOG-mapper	397291.C804_00921	Helix-hairpin-helix motif	NA
UHGV-0148369_50	Pfam	PF02811	PHP domain	PHP
UHGV-0148369_50	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0148369_50	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0148369_50	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0148369_50	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0148369_50	Structural annotation	PF07733, PF17657, PF14579, PF06125, MF_01902, NF005617, COG0587	NA	NA
UHGV-0148369_58	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-0148369_58	PHROG	phrog_24834	NA	unknown function
UHGV-0148369_58	UniRef90	UniRef90_A0A1G5ETK2	23S rRNA (Adenine2503-C2)-methyltransferase	NA
UHGV-0148369_58	eggNOG-mapper	525919.Apre_0823	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-0148369_58	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-0148369_58	Structural annotation	MF_01849, TIGR00048, COG0820	NA	NA
UHGV-0148369_60	PHROG	phrog_8684	NA	unknown function
UHGV-0148369_60	UniRef90	UniRef90_UPI00097A68BC	YopX family protein	NA
UHGV-0148369_60	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0148369_60	Pfam	PF09643	YopX protein	YopX
UHGV-0148369_60	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0148369_60	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0148369_63	Structural annotation	COG3084	NA	NA
UHGV-0148369_65	PHROG	phrog_6721	NA	unknown function
UHGV-0148369_65	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0148369_65	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0148369_70	PHROG	phrog_474	phosphofructokinase	other
UHGV-0148369_70	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0148369_70	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0148369_70	Pfam	PF19905	NA	DUF6378
UHGV-0148369_70	Structural annotation	PF19905	NA	NA
UHGV-0148369_74	UniRef90	UniRef90_A0A1Q6QIQ4	Glutaredoxin domain-containing protein	NA
UHGV-0148369_74	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0148369_74	Structural annotation	PF13192, MF_01132, TIGR02190, COG0695	NA	NA
UHGV-0148369_75	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0148369_75	PHROG	phrog_25611	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0148369_75	UniRef90	UniRef90_A0A7X9HH20	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0148369_75	eggNOG-mapper	12336.Q332F0_CBCP	ribonucleoside-triphosphate reductase activity	NA
UHGV-0148369_75	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0148369_75	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0148369_75	Structural annotation	PF13597, MF_04027, TIGR02827, COG1328	NA	NA
UHGV-0148369_76	UniRef90	UniRef90_A0A7X9HI26	4Fe-4S cluster-binding domain-containing protein	NA
UHGV-0148369_76	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0148369_76	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0148369_76	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0148369_78	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0148369_78	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0148369_78	UniRef90	UniRef90_A0A7Z1KDQ7	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0148369_78	eggNOG-mapper	1274524.BSONL12_04833	Deoxyuridine 5'-triphosphate	NA
UHGV-0148369_78	Pfam	PF00692	dUTPase	dUTPase
UHGV-0148369_78	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0148369_78	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0148369_80	AcrCatalog	cluster_47924	NA	NA
UHGV-0148369_81	PHROG	phrog_263	holin	lysis
UHGV-0148369_81	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0148369_81	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0148369_81	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0148369_81	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0148369_81	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0148369_82	PHROG	phrog_937	hemolysin	other
UHGV-0148369_83	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148369_83	PHROG	phrog_435	endolysin	lysis
UHGV-0148369_83	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0148369_83	eggNOG-mapper	1385512.N784_12965	Ami_3	NA
UHGV-0148369_83	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0148369_83	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148369_83	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0148369_85	PHROG	phrog_27545	NA	unknown function
UHGV-0148369_85	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0148369_85	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0148369_85	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0148369_87	Structural annotation	PF02973	NA	NA
UHGV-0148369_88	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0148369_88	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0148369_90	PHROG	phrog_1401	NA	unknown function
UHGV-0148369_90	eggNOG-mapper	1415775.U729_2617	NA	NA
UHGV-0148369_90	Structural annotation	PF07761	NA	NA
UHGV-0148369_91	PHROG	phrog_7389	tail fiber protein	tail