UHGV-0148391

Genome information

Genome length 44,468 bps

CDS count 73

Completeness 98.90% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148391
vOTU ID	vOTU-010487
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400981
BioSample	SAMN05194704
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.02
Jumbo phage	No

Genome content
Genome length	44,468 bps
GC content	32.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.69%
Average CDS length	556.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148391_1	UniRef90	UniRef90_A0A374RTA4	Thioredoxin	NA
UHGV-0148391_1	eggNOG-mapper	518637.EUBIFOR_01008	COG0526, thiol-disulfide isomerase and thioredoxins	NA
UHGV-0148391_1	Pfam	PF13728	F plasmid transfer operon protein	TraF
UHGV-0148391_1	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0148391_2	UniRef90	UniRef90_A0A412I387	NA	NA
UHGV-0148391_2	eggNOG-mapper	518637.EUBIFOR_01009	NA	NA
UHGV-0148391_2	PADLOC	drt-cluster579	DRT	DRT
UHGV-0148391_2	Pfam	PF08902	NA	DUF1848
UHGV-0148391_2	COG	COG1533	DNA repair photolyase	NA
UHGV-0148391_2	Structural annotation	PF08902, MF_01873, NF033719, COG0820	NA	NA
UHGV-0148391_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148391_3	PHROG	phrog_7698	endolysin	lysis
UHGV-0148391_3	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148391_3	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0148391_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0148391_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0148391_3	Structural annotation	COG5632	NA	NA
UHGV-0148391_5	PHROG	phrog_443	holin	lysis
UHGV-0148391_5	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0148391_5	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0148391_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0148391_5	Structural annotation	PF16945	NA	NA
UHGV-0148391_7	PHROG	phrog_20016	NA	unknown function
UHGV-0148391_7	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0148391_7	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0148391_7	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0148391_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0148391_8	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0148391_8	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0148391_13	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0148391_13	PHROG	phrog_13515	phosphodiesterase	other
UHGV-0148391_13	eggNOG-mapper	508419.F8J173_9CAUD	glycerophosphodiester phosphodiesterase activity	NA
UHGV-0148391_13	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0148391_14	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0148391_15	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0148391_16	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0148391_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0148391_17	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0148391_17	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0148391_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0148391_17	COG	COG4926	Phage-related protein	NA
UHGV-0148391_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0148391_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0148391_18	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0148391_18	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0148391_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0148391_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148391_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0148391_19	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0148391_19	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0148391_19	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0148391_19	eggNOG-mapper	1123299.AUKZ01000018_gene181	Phage-related minor tail protein	NA
UHGV-0148391_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0148391_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0148391_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0148391_19	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0148391_21	Structural annotation	PF11836	NA	NA
UHGV-0148391_22	PHROG	phrog_88	major tail protein	tail
UHGV-0148391_22	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0148391_22	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0148391_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0148391_22	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0148391_23	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0148391_23	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0148391_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148391_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0148391_24	UniRef90	UniRef90_C3DN78	Prophage pi2 protein 38	NA
UHGV-0148391_24	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0148391_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0148391_25	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0148391_25	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0148391_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0148391_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0148391_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148391_26	PHROG	phrog_5223	neck protein	connector
UHGV-0148391_26	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0148391_26	Structural annotation	TIGR01560	NA	NA
UHGV-0148391_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148391_27	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0148391_27	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0148391_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148391_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148391_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148391_27	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148391_28	KOfam	K06904	NA	NA
UHGV-0148391_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0148391_28	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0148391_28	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0148391_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0148391_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0148391_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0148391_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0148391_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148391_29	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0148391_29	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0148391_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148391_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148391_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148391_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148391_30	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0148391_30	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0148391_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148391_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148391_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148391_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148391_31	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0148391_31	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0148391_31	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0148391_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148391_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0148391_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0148391_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148391_32	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0148391_32	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0148391_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0148391_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148391_33	eggNOG-mapper	502558.EGYY_11910	NA	NA
UHGV-0148391_36	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0148391_41	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0148391_41	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0148391_41	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0148391_42	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0148391_42	Pfam	PF07374	NA	DUF1492
UHGV-0148391_42	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0148391_45	Structural annotation	PF11061	NA	NA
UHGV-0148391_50	Structural annotation	PF01104, NF041014	NA	NA
UHGV-0148391_52	PHROG	phrog_15198	NA	unknown function
UHGV-0148391_52	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0148391_52	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0148391_52	Pfam	PF04448	NA	DUF551
UHGV-0148391_53	PHROG	phrog_2715	NA	unknown function
UHGV-0148391_53	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0148391_53	Structural annotation	PF18406	NA	NA
UHGV-0148391_54	Structural annotation	PF17888	NA	NA
UHGV-0148391_55	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0148391_55	UniRef90	UniRef90_UPI001D0A0924	dUTP diphosphatase	NA
UHGV-0148391_55	eggNOG-mapper	1087448.Eab7_2034	Protein conserved in bacteria	NA
UHGV-0148391_55	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0148391_55	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0148391_55	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0148391_56	PHROG	phrog_2715	NA	unknown function
UHGV-0148391_56	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0148391_56	Structural annotation	PF18406	NA	NA
UHGV-0148391_58	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0148391_59	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0148391_62	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0148391_62	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0148391_62	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0148391_62	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0148391_62	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0148391_62	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0148391_62	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0148391_63	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148391_63	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0148391_63	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0148391_63	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0148391_63	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0148391_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0148391_63	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0148391_68	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0148391_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0148391_68	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0148391_68	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0148391_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148391_68	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0148391_68	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0148391_72	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148391_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148391_72	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-0148391_72	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148391_72	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0148391_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148391_72	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0148391_73	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0148391_73	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0148391_73	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0148391_73	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0148391_73	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA