UHGV-0148396

Genome information

Genome length 41,098 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148396
vOTU ID	vOTU-068403
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400967
BioSample	SAMN05194704
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.97
Jumbo phage	No

Genome content
Genome length	41,098 bps
GC content	42.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.81%
Average CDS length	604.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148396_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0148396_1	PHROG	phrog_291	endolysin	lysis
UHGV-0148396_1	UniRef90	UniRef90_A0A7U9QWG5	Autolytic lysozyme	NA
UHGV-0148396_1	eggNOG-mapper	1232447.BAHW02000025_gene1685	Glycosyl hydrolase, family 25	NA
UHGV-0148396_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148396_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148396_1	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0148396_3	PHROG	phrog_17196	kinase	other
UHGV-0148396_3	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0148396_3	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0148396_3	Structural annotation	PF13619	NA	NA
UHGV-0148396_5	PHROG	phrog_18190	NA	unknown function
UHGV-0148396_5	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0148396_5	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0148396_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0148396_6	PHROG	phrog_1194	NA	unknown function
UHGV-0148396_6	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0148396_6	Pfam	PF20458	NA	DUF6711
UHGV-0148396_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0148396_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0148396_7	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0148396_7	COG	COG1511	NA	NA
UHGV-0148396_8	PHROG	phrog_706	NA	unknown function
UHGV-0148396_8	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0148396_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0148396_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0148396_8	Structural annotation	PF06854	NA	NA
UHGV-0148396_9	PHROG	phrog_11299	NA	unknown function
UHGV-0148396_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0148396_9	Structural annotation	PF10666	NA	NA
UHGV-0148396_10	PHROG	phrog_3099	NA	unknown function
UHGV-0148396_10	UniRef90	UniRef90_A0A7M3SAI1	S-l_SbsC_C domain-containing protein	NA
UHGV-0148396_10	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0148396_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0148396_11	PHROG	phrog_3266	tail completion	connector
UHGV-0148396_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0148396_11	Structural annotation	PF12691	NA	NA
UHGV-0148396_12	PHROG	phrog_3366	NA	unknown function
UHGV-0148396_12	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0148396_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0148396_13	PHROG	phrog_18218	NA	unknown function
UHGV-0148396_13	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0148396_13	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0148396_13	Structural annotation	PF06946	NA	NA
UHGV-0148396_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0148396_14	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0148396_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0148396_15	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0148396_15	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0148396_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0148396_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0148396_16	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0148396_16	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0148396_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0148396_16	Structural annotation	PF06810	NA	NA
UHGV-0148396_17	PHROG	phrog_28802	NA	unknown function
UHGV-0148396_17	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0148396_19	PHROG	phrog_16490	NA	unknown function
UHGV-0148396_19	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0148396_20	PHROG	phrog_22984	NA	unknown function
UHGV-0148396_21	PHROG	phrog_21718	NA	unknown function
UHGV-0148396_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0148396_22	UniRef90	UniRef90_A0A6N2TVE6	HTH_11 domain-containing protein	NA
UHGV-0148396_22	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0148396_22	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0148396_23	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0148396_23	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0148396_24	PHROG	phrog_3754	NA	unknown function
UHGV-0148396_24	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0148396_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0148396_25	UniRef90	UniRef90_A0A1K1N983	Phage minor capsid protein 2	NA
UHGV-0148396_25	eggNOG-mapper	1235790.C805_00050	Phage minor capsid protein 2	NA
UHGV-0148396_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0148396_25	COG	COG2369	NA	NA
UHGV-0148396_25	Structural annotation	PF06152	NA	NA
UHGV-0148396_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0148396_26	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0148396_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0148396_26	Structural annotation	PF11114	NA	NA
UHGV-0148396_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0148396_27	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0148396_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0148396_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0148396_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148396_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0148396_28	UniRef90	UniRef90_A0A1C7I418	Terminase	NA
UHGV-0148396_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0148396_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0148396_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0148396_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0148396_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148396_28	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0148396_30	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0148396_30	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0148396_30	UniRef90	UniRef90_A0A8A9IDH7	Nucleoid occlusion protein	NA
UHGV-0148396_30	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0148396_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0148396_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0148396_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0148396_30	COG	COG0863	DNA modification methylase	NA
UHGV-0148396_30	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0148396_33	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0148396_33	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0148396_33	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0148396_34	PHROG	phrog_2045	NA	unknown function
UHGV-0148396_34	UniRef90	UniRef90_UPI001D0640D9	phage Gp37/Gp68 family protein	NA
UHGV-0148396_34	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0148396_34	Pfam	PF07505	NA	DUF5131
UHGV-0148396_34	COG	COG4422	NA	NA
UHGV-0148396_34	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0148396_35	KOfam	K07392	PRS2; AAA family ATPase	NA
UHGV-0148396_35	PHROG	phrog_3757	NA	unknown function
UHGV-0148396_35	UniRef90	UniRef90_A0A1Q6KIJ0	AAA domain-containing protein	NA
UHGV-0148396_35	eggNOG-mapper	1235802.C823_01035	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0148396_35	PADLOC	IetA_00002	NA	ietAS
UHGV-0148396_35	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0148396_35	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0148396_35	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0148396_36	eggNOG-mapper	1235790.C805_00061	NA	NA
UHGV-0148396_37	UniRef90	UniRef90_A0A6L5YG44	NA	NA
UHGV-0148396_37	eggNOG-mapper	1235800.C819_00236	NA	NA
UHGV-0148396_37	Pfam	PF14199	NA	DUF4317
UHGV-0148396_37	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0148396_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0148396_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0148396_38	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148396_38	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0148396_38	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0148396_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148396_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0148396_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0148396_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0148396_41	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0148396_41	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0148396_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0148396_41	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0148396_43	PHROG	phrog_874	NA	unknown function
UHGV-0148396_43	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0148396_43	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0148396_43	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0148396_44	PHROG	phrog_20593	NA	unknown function
UHGV-0148396_47	PHROG	phrog_19106	NA	unknown function
UHGV-0148396_47	UniRef90	UniRef90_UPI001D086F0C	GIY-YIG nuclease family protein	NA
UHGV-0148396_47	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0148396_47	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0148396_47	Structural annotation	TIGR01453	NA	NA
UHGV-0148396_48	PHROG	phrog_15768	NA	unknown function
UHGV-0148396_48	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0148396_48	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0148396_49	PHROG	phrog_7566	NA	unknown function
UHGV-0148396_49	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0148396_49	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0148396_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0148396_50	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0148396_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0148396_51	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148396_51	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0148396_51	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0148396_51	Pfam	PF06378	NA	DUF1071
UHGV-0148396_51	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0148396_52	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0148396_57	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0148396_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148396_58	UniRef90	UniRef90_UPI0011DD19D6	helix-turn-helix domain-containing protein	NA
UHGV-0148396_58	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0148396_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148396_58	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0148396_59	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148396_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148396_59	UniRef90	UniRef90_D4L3N7	Helix-turn-helix	NA
UHGV-0148396_59	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148396_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148396_59	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0148396_59	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0148396_60	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0148396_60	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0148396_60	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0148396_60	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0148396_60	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0148396_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148396_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0148396_61	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0148396_61	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0148396_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148396_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-0148396_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0148396_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148396_61	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0148396_62	KOfam	K00617	sftT; 6-deoxy-6-sulfo-D-fructose transaldolase [EC:2.2.1.14]	NA
UHGV-0148396_62	PHROG	phrog_440	transaldolase	other
UHGV-0148396_62	UniRef90	UniRef90_A0A2K4ZEW2	Probable transaldolase	NA
UHGV-0148396_62	eggNOG-mapper	411469.EUBHAL_00003	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	NA
UHGV-0148396_62	Pfam	PF00923	Transaldolase/Fructose-6-phosphate aldolase	TAL_FSA
UHGV-0148396_62	NCBIFam	TIGR00875.1	fructose-6-phosphate aldolase	NA
UHGV-0148396_62	COG	COG0176	Transaldolase/fructose-6-phosphate aldolase	NA
UHGV-0148396_62	HAMAP	MF_00494	Probable transaldolase [tal]	NA