UHGV-0148441

Genome information

Genome length 31,125 bps

CDS count 49

Completeness 88.47% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148441
vOTU ID	vOTU-065576
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_401887
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.86
Jumbo phage	No

Genome content
Genome length	31,125 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.95%
Average CDS length	580.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148441_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148441_1	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0148441_1	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0148441_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148441_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148441_1	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148441_2	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0148441_2	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148441_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148441_2	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0148441_9	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0148441_9	Structural annotation	PF15597	NA	NA
UHGV-0148441_11	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0148441_12	PHROG	phrog_6058	NA	unknown function
UHGV-0148441_12	eggNOG-mapper	1260356.D920_00020	NA	NA
UHGV-0148441_12	Structural annotation	NF033787	NA	NA
UHGV-0148441_13	Structural annotation	COG1862	NA	NA
UHGV-0148441_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0148441_17	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0148441_17	UniRef90	UniRef90_F3AXU5	ParB domain-containing protein	NA
UHGV-0148441_17	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0148441_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0148441_17	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0148441_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0148441_18	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0148441_18	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0148441_18	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0148441_19	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0148441_19	PHROG	phrog_5696	NA	unknown function
UHGV-0148441_19	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0148441_19	eggNOG-mapper	1235802.C823_05701	N-6 DNA Methylase	NA
UHGV-0148441_19	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0148441_19	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0148441_19	Structural annotation	COG0286	NA	NA
UHGV-0148441_20	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148441_20	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0148441_20	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0148441_20	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0148441_20	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0148441_20	Structural annotation	PF13936, NF040595, COG2771	NA	NA
UHGV-0148441_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0148441_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0148441_21	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0148441_21	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0148441_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0148441_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148441_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0148441_21	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0148441_22	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148441_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148441_22	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0148441_22	eggNOG-mapper	935845.JADQ01000015_gene3206	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0148441_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148441_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0148441_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0148441_23	PHROG	phrog_24518	NA	unknown function
UHGV-0148441_23	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0148441_24	PHROG	phrog_824	NA	unknown function
UHGV-0148441_24	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0148441_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0148441_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0148441_24	Structural annotation	PF08774	NA	NA
UHGV-0148441_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148441_27	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0148441_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0148441_28	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0148441_28	Structural annotation	TIGR01636	NA	NA
UHGV-0148441_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148441_29	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0148441_29	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0148441_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0148441_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148441_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0148441_30	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0148441_30	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0148441_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148441_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0148441_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148441_31	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0148441_31	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0148441_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148441_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148441_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148441_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148441_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148441_32	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0148441_32	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0148441_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148441_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148441_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148441_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148441_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0148441_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0148441_33	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0148441_33	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0148441_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0148441_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0148441_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0148441_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148441_34	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0148441_34	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0148441_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148441_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148441_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148441_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148441_35	PHROG	phrog_749	NA	unknown function
UHGV-0148441_35	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0148441_35	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0148441_36	PHROG	phrog_19734	NA	unknown function
UHGV-0148441_36	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0148441_36	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0148441_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0148441_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148441_37	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0148441_38	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0148441_38	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0148441_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148441_38	Structural annotation	TIGR01725	NA	NA
UHGV-0148441_39	PHROG	phrog_88	major tail protein	tail
UHGV-0148441_39	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0148441_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0148441_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0148441_40	Structural annotation	PF11836	NA	NA
UHGV-0148441_41	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0148441_41	PHROG	phrog_5218	NA	unknown function
UHGV-0148441_41	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0148441_41	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0148441_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0148441_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0148441_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0148441_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0148441_42	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0148441_42	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0148441_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148441_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0148441_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0148441_43	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0148441_43	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0148441_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0148441_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0148441_43	COG	COG1511	NA	NA
UHGV-0148441_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0148441_44	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0148441_44	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0148441_46	PHROG	phrog_199	holin	lysis
UHGV-0148441_46	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0148441_46	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0148441_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0148441_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0148441_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0148441_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0148441_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148441_47	PHROG	phrog_20388	endolysin	lysis
UHGV-0148441_47	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148441_47	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148441_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0148441_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0148441_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148441_47	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0148441_48	UniRef90	UniRef90_A0A6I3PLH9	Helix-turn-helix domain-containing protein	NA
UHGV-0148441_48	eggNOG-mapper	140626.JHWB01000009_gene1336	sequence-specific DNA binding	NA
UHGV-0148441_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148441_48	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0148441_48	Structural annotation	PF01381, NF040522, COG2944	NA	NA