UHGV-0148443

Genome information

Genome length 25,799 bps

CDS count 40

Completeness 67.19% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148443
vOTU ID	vOTU-027319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_405649
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.87
Jumbo phage	No

Genome content
Genome length	25,799 bps
GC content	57.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.94%
Average CDS length	609.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148443_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0148443_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0148443_1	eggNOG-mapper	202752.JL53_00755	Phage terminase, small subunit	NA
UHGV-0148443_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148443_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0148443_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148443_2	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0148443_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0148443_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148443_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148443_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148443_3	PHROG	phrog_21498	NA	unknown function
UHGV-0148443_3	UniRef90	UniRef90_A0A3R6J122	Chromosome partitioning protein ParB	NA
UHGV-0148443_3	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0148443_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0148443_3	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0148443_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148443_4	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0148443_4	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0148443_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148443_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148443_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148443_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148443_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0148443_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0148443_5	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0148443_5	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0148443_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0148443_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0148443_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0148443_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148443_6	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0148443_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0148443_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148443_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0148443_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148443_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148443_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148443_7	PHROG	phrog_749	NA	unknown function
UHGV-0148443_7	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0148443_8	PHROG	phrog_19734	NA	unknown function
UHGV-0148443_8	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0148443_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0148443_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148443_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0148443_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0148443_10	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0148443_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0148443_10	Structural annotation	TIGR01725	NA	NA
UHGV-0148443_11	PHROG	phrog_88	major tail protein	tail
UHGV-0148443_11	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0148443_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0148443_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0148443_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0148443_12	eggNOG-mapper	665950.HMPREF1025_02659	NA	NA
UHGV-0148443_12	Structural annotation	PF11836	NA	NA
UHGV-0148443_14	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0148443_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0148443_14	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0148443_14	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0148443_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0148443_14	Structural annotation	COG5280	NA	NA
UHGV-0148443_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0148443_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0148443_16	PHROG	phrog_13879	NA	unknown function
UHGV-0148443_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0148443_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0148443_18	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0148443_18	PHROG	phrog_11157	NA	unknown function
UHGV-0148443_18	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0148443_18	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0148443_18	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0148443_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0148443_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0148443_18	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0148443_19	PHROG	phrog_18725	NA	unknown function
UHGV-0148443_19	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0148443_19	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0148443_20	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0148443_22	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0148443_22	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0148443_22	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0148443_23	PHROG	phrog_4105	NA	unknown function
UHGV-0148443_23	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0148443_24	PHROG	phrog_13256	NA	unknown function
UHGV-0148443_24	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0148443_26	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0148443_26	PHROG	phrog_18955	NA	unknown function
UHGV-0148443_26	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0148443_26	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0148443_26	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0148443_26	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0148443_26	COG	COG3108	NA	NA
UHGV-0148443_26	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0148443_29	PHROG	phrog_3754	NA	unknown function
UHGV-0148443_29	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0148443_30	PHROG	phrog_21718	NA	unknown function
UHGV-0148443_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0148443_31	PHROG	phrog_22984	NA	unknown function
UHGV-0148443_32	PHROG	phrog_16490	NA	unknown function
UHGV-0148443_32	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0148443_33	PHROG	phrog_20016	NA	unknown function
UHGV-0148443_33	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0148443_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0148443_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0148443_35	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0148443_36	KOfam	K14059	int; integrase	NA
UHGV-0148443_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0148443_36	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0148443_36	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0148443_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148443_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148443_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0148443_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148443_37	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0148443_37	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0148443_38	PHROG	phrog_17982	NA	unknown function
UHGV-0148443_38	UniRef90	UniRef90_UPI000C823954	NA	NA
UHGV-0148443_38	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0148443_38	Pfam	PF14020	NA	DUF4236
UHGV-0148443_38	Structural annotation	PF14020	NA	NA
UHGV-0148443_39	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-0148443_39	eggNOG-mapper	1226322.HMPREF1545_01476	Copper amine oxidase N-terminal domain	NA
UHGV-0148443_39	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1