UHGV-0148568

Genome information

Genome length 23,040 bps

CDS count 41

Completeness 59.01% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148568
vOTU ID	vOTU-027326
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394564
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.18
Jumbo phage	No

Genome content
Genome length	23,040 bps
GC content	50.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	84.24%
Average CDS length	477.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148568_1	PHROG	phrog_27374	NA	unknown function
UHGV-0148568_1	UniRef90	UniRef90_UPI000A5D5C63	phage tail protein	NA
UHGV-0148568_1	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-0148568_2	PHROG	phrog_347	tail terminator	connector
UHGV-0148568_2	UniRef90	UniRef90_A0A163VZX5	NA	NA
UHGV-0148568_2	eggNOG-mapper	571.MC52_01375	Structural component (Phage or Prophage Related)	NA
UHGV-0148568_2	Pfam	PF11367	NA	DUF3168
UHGV-0148568_2	Structural annotation	PF11367	NA	NA
UHGV-0148568_3	PHROG	phrog_23409	NA	unknown function
UHGV-0148568_3	UniRef90	UniRef90_A0A8I2IXX0	HK97 gp10 family phage protein	NA
UHGV-0148568_3	eggNOG-mapper	571.MC52_01380	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0148568_3	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148568_3	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0148568_3	Structural annotation	TIGR01725	NA	NA
UHGV-0148568_4	PHROG	phrog_25	head closure Hc1	connector
UHGV-0148568_4	UniRef90	UniRef90_A0A486NQP1	Head-tail adaptor protein	NA
UHGV-0148568_4	eggNOG-mapper	573.JG24_11005	head-tail adaptor	NA
UHGV-0148568_4	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0148568_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0148568_4	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0148568_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148568_5	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0148568_5	UniRef90	UniRef90_A0A2X4ZCB4	Phage gp6-like head-tail connector protein	NA
UHGV-0148568_5	eggNOG-mapper	1397284.AYMN01000081_gene2455	Phage gp6-like head-tail connector protein	NA
UHGV-0148568_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0148568_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0148568_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148568_6	UniRef90	UniRef90_A0A3N2S270	Phage major capsid protein	NA
UHGV-0148568_6	eggNOG-mapper	1147158.K7PJR8_9CAUD	peptidase activity	NA
UHGV-0148568_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148568_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148568_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148568_7	KOfam	K06904	NA	NA
UHGV-0148568_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0148568_7	UniRef90	UniRef90_A0A2X4Z712	Phage prohead protease	NA
UHGV-0148568_7	eggNOG-mapper	1397284.AYMN01000081_gene2457	Prohead protease	NA
UHGV-0148568_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0148568_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0148568_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0148568_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0148568_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148568_8	UniRef90	UniRef90_A0A2X4YRU1	Phage portal protein	NA
UHGV-0148568_8	eggNOG-mapper	1397284.AYMN01000081_gene2458	Phage portal protein	NA
UHGV-0148568_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148568_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148568_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148568_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148568_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148568_9	UniRef90	UniRef90_A0A377ZYG0	Phage terminase large subunit	NA
UHGV-0148568_9	eggNOG-mapper	573.JG24_10975	terminase	NA
UHGV-0148568_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148568_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148568_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148568_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0148568_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0148568_10	UniRef90	UniRef90_A0A377ZY98	Phage terminase small subunit	NA
UHGV-0148568_10	eggNOG-mapper	35703.DQ02_24235	phage terminase small subunit	NA
UHGV-0148568_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148568_10	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0148568_10	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0148568_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0148568_11	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148568_11	UniRef90	UniRef90_A0A2X4YRT2	HNH endonuclease	NA
UHGV-0148568_11	eggNOG-mapper	573.JG24_10965	HNH nucleases	NA
UHGV-0148568_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148568_12	PHROG	phrog_17438	NA	unknown function
UHGV-0148568_12	eggNOG-mapper	349965.yinte0001_26890	NA	NA
UHGV-0148568_13	PHROG	phrog_571	NA	unknown function
UHGV-0148568_13	UniRef90	UniRef90_UPI00066758B0	NA	NA
UHGV-0148568_13	eggNOG-mapper	571.MC52_01440	NA	NA
UHGV-0148568_13	Pfam	PF10834	NA	DUF2560
UHGV-0148568_13	Structural annotation	PF10834	NA	NA
UHGV-0148568_14	PHROG	phrog_1453	NA	unknown function
UHGV-0148568_14	UniRef90	UniRef90_Q6UAR9	Gp63	NA
UHGV-0148568_14	eggNOG-mapper	1005999.GLGR_1892	NA	NA
UHGV-0148568_15	eggNOG-mapper	1349785.BAUG01000003_gene284	NA	NA
UHGV-0148568_16	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0148568_16	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0148568_17	PHROG	phrog_1356	holin	lysis
UHGV-0148568_17	UniRef90	UniRef90_A0A5B9N5E4	Holin class II	NA
UHGV-0148568_17	eggNOG-mapper	568768.CM001975_gene2310	NA	NA
UHGV-0148568_18	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0148568_18	PHROG	phrog_181	endolysin	lysis
UHGV-0148568_18	UniRef90	UniRef90_UPI0015A7542D	glycoside hydrolase family 19 protein	NA
UHGV-0148568_18	eggNOG-mapper	573.JG24_10935	PFAM glycoside hydrolase family 19	NA
UHGV-0148568_18	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0148568_18	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0148568_18	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0148568_19	PHROG	phrog_217	holin	lysis
UHGV-0148568_19	UniRef90	UniRef90_A0A168RD66	Membrane protein	NA
UHGV-0148568_19	eggNOG-mapper	573.JG24_10930	Putative 3TM holin, Phage_holin_3	NA
UHGV-0148568_19	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0148568_20	PHROG	phrog_198	holin	lysis
UHGV-0148568_20	UniRef90	UniRef90_A0A0F6TUZ0	Membrane protein	NA
UHGV-0148568_20	eggNOG-mapper	1399774.JDWH01000016_gene3442	Putative phage holin	NA
UHGV-0148568_20	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0148568_20	Structural annotation	PF16931	NA	NA
UHGV-0148568_22	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0148568_22	eggNOG-mapper	61647.LG71_19605	NA	NA
UHGV-0148568_22	Structural annotation	PF06576	NA	NA
UHGV-0148568_23	PHROG	phrog_2705	NA	unknown function
UHGV-0148568_23	UniRef90	UniRef90_A0A443WQI9	YlcG family protein	NA
UHGV-0148568_23	eggNOG-mapper	1286170.RORB6_10200	NA	NA
UHGV-0148568_23	NCBIFam	NF033498.1	YlcG family protein	NA
UHGV-0148568_23	Structural annotation	NF033498	NA	NA
UHGV-0148568_24	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0148568_24	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0148568_24	UniRef90	UniRef90_A0A0H3H8W8	MT-A70 family protein	NA
UHGV-0148568_24	eggNOG-mapper	640513.Entas_3091	Belongs to the MT-A70-like family	NA
UHGV-0148568_24	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0148568_24	Pfam	PF05063	MT-A70	MT-A70
UHGV-0148568_24	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0148568_24	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0148568_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0148568_25	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0148568_25	UniRef90	UniRef90_A0A3T0QUK2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148568_25	eggNOG-mapper	215158.Q858D4_BPE15	C-5 cytosine-specific DNA methylase	NA
UHGV-0148568_25	PADLOC	DruM2_00001	DNA cytosine methylase	Druantia
UHGV-0148568_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148568_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0148568_26	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148568_26	UniRef90	UniRef90_UPI00141C1034	recombination protein NinG	NA
UHGV-0148568_26	eggNOG-mapper	35703.DQ02_12500	Bacteriophage Lambda NinG protein	NA
UHGV-0148568_26	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0148568_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148568_26	Structural annotation	PF05766	NA	NA
UHGV-0148568_27	PHROG	phrog_340	NA	unknown function
UHGV-0148568_28	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0148568_28	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0148568_28	UniRef90	UniRef90_A0A1F2LWF3	XRE family transcriptional regulator	NA
UHGV-0148568_28	eggNOG-mapper	61647.LG71_19625	damage-inducible protein I	NA
UHGV-0148568_28	Pfam	PF06183	DinI-like family	DinI
UHGV-0148568_28	Structural annotation	PF06183, NF007893	NA	NA
UHGV-0148568_29	PHROG	phrog_4595	NA	unknown function
UHGV-0148568_29	eggNOG-mapper	220341.16502183	NA	NA
UHGV-0148568_29	Structural annotation	PF20090, NF041544	NA	NA
UHGV-0148568_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0148568_30	PHROG	phrog_25613	NA	unknown function
UHGV-0148568_30	UniRef90	UniRef90_UPI00024FDEB4	ParB/RepB/Spo0J family partition protein	NA
UHGV-0148568_30	eggNOG-mapper	573.JG24_10860	NA	NA
UHGV-0148568_30	Pfam	PF17762	HTH domain found in ParB protein	HTH_ParB
UHGV-0148568_30	Structural annotation	PF02195, PF08535, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0148568_31	Structural annotation	PF14354, TIGR04203	NA	NA
UHGV-0148568_32	PHROG	phrog_1687	MarR family transcrition regulator	transcription regulation
UHGV-0148568_32	UniRef90	UniRef90_UPI0007D6CC19	MarR family transcriptional regulator	NA
UHGV-0148568_32	eggNOG-mapper	1080067.BAZH01000027_gene3211	Transcriptional regulator	NA
UHGV-0148568_32	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0148568_32	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0148568_33	PHROG	phrog_9773	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0148568_33	UniRef90	UniRef90_A0A0H3HB76	Phage O protein family	NA
UHGV-0148568_33	eggNOG-mapper	573.JG24_10845	NA	NA
UHGV-0148568_33	Structural annotation	PF03882, NF041413, COG1675	NA	NA
UHGV-0148568_34	UniRef90	UniRef90_UPI0013F43FFA	NA	NA
UHGV-0148568_34	Structural annotation	PF13973, MF_00749, NF037951, COG4481	NA	NA
UHGV-0148568_35	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0148568_35	UniRef90	UniRef90_A0A0H3H652	YdaT_toxin domain-containing protein	NA
UHGV-0148568_35	eggNOG-mapper	155864.EDL933_1252	Putative bacterial toxin ydaT	NA
UHGV-0148568_35	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0148568_35	Structural annotation	PF06254	NA	NA
UHGV-0148568_36	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0148568_36	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0148568_36	UniRef90	UniRef90_UPI0012B6E777	Cro/CI family transcriptional regulator	NA
UHGV-0148568_36	eggNOG-mapper	198214.SF0875	DNA-binding transcriptional regulator Cro	NA
UHGV-0148568_36	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0148568_36	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0148568_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0148568_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148568_37	UniRef90	UniRef90_UPI00178006FA	helix-turn-helix domain-containing protein	NA
UHGV-0148568_37	eggNOG-mapper	316407.1742572	This protein is a repressor of division inhibition gene dicB	NA
UHGV-0148568_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148568_37	NCBIFam	NF007257.0	transcriptional repressor DicA	NA
UHGV-0148568_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148568_37	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0148568_38	UniRef90	UniRef90_A0A7W3B5F1	Host cell division inhibitory peptide Kil	NA
UHGV-0148568_38	Structural annotation	PF06301	NA	NA
UHGV-0148568_40	PHROG	phrog_1001	NA	unknown function
UHGV-0148568_40	eggNOG-mapper	573.JG24_10795	NA	NA
UHGV-0148568_40	Structural annotation	PF00936, MF_00854, NF012018, COG4577	NA	NA
UHGV-0148568_41	PHROG	phrog_19610	NA	unknown function
UHGV-0148568_41	eggNOG-mapper	1029823.AFIE01000007_gene1921	NA	NA