UHGV-0148572

Genome information

vOTU vOTU-021907

Genome length 24,945 bps

CDS count 25

Completeness 66.56% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148572
vOTU ID	vOTU-021907
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394548
BioSample	SAMN04436914
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.82
Jumbo phage	No

Genome content
Genome length	24,945 bps
GC content	36.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	94.86%
Average CDS length	955.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148572_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148572_1	UniRef90	UniRef90_A0A4U0CNH5	Terminase large subunit	NA
UHGV-0148572_1	eggNOG-mapper	1423758.BN55_04245	Phage Terminase	NA
UHGV-0148572_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148572_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148572_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148572_1	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0148572_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148572_2	UniRef90	UniRef90_D0DKS6	Phage portal protein (Fragment)	NA
UHGV-0148572_2	eggNOG-mapper	1423758.BN55_04255	Phage portal protein	NA
UHGV-0148572_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148572_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0148572_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148572_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148572_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0148572_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0148572_3	UniRef90	UniRef90_A0A4U0CPI5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0148572_3	eggNOG-mapper	1423758.BN55_04260	Belongs to the peptidase S14 family	NA
UHGV-0148572_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0148572_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0148572_3	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0148572_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148572_4	UniRef90	UniRef90_A0A4U0CPN5	Phage major capsid protein	NA
UHGV-0148572_4	eggNOG-mapper	1423743.JCM14108_2644	Phage capsid family	NA
UHGV-0148572_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148572_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148572_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148572_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148572_5	UniRef90	UniRef90_D0DKS9	DNA packaging protein, QLRG family	NA
UHGV-0148572_5	eggNOG-mapper	1423758.BN55_04270	Phage gp6-like head-tail connector protein	NA
UHGV-0148572_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0148572_5	Structural annotation	TIGR01560	NA	NA
UHGV-0148572_6	UniRef90	UniRef90_A0A4U0CQ01	Head-tail adaptor protein	NA
UHGV-0148572_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0148572_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0148572_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0148572_7	UniRef90	UniRef90_UPI0013FE4B00	HK97 gp10 family phage protein	NA
UHGV-0148572_7	eggNOG-mapper	1423732.BALS01000063_gene2225	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0148572_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0148572_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0148572_7	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0148572_8	PHROG	phrog_1217	tail protein	tail
UHGV-0148572_8	UniRef90	UniRef90_A0A8F8QHB9	NA	NA
UHGV-0148572_8	Pfam	PF05657	NA	DUF806
UHGV-0148572_8	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0148572_9	PHROG	phrog_88	major tail protein	tail
UHGV-0148572_9	UniRef90	UniRef90_UPI001566DDDE	phage tail protein	NA
UHGV-0148572_9	eggNOG-mapper	1158614.I592_00627	Phage tail tube protein	NA
UHGV-0148572_9	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0148572_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0148572_10	PHROG	phrog_1346	tail protein	tail
UHGV-0148572_10	Pfam	PF06896	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
UHGV-0148572_10	Structural annotation	PF06896	NA	NA
UHGV-0148572_11	PHROG	phrog_2629	NA	unknown function
UHGV-0148572_11	eggNOG-mapper	1423732.BALS01000063_gene2229	NA	NA
UHGV-0148572_12	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0148572_12	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0148572_12	UniRef90	UniRef90_A0A4Q0LVI5	Phage tail protein	NA
UHGV-0148572_12	eggNOG-mapper	1545701.LACWKB10_1193	Phage tail tape measure protein TP901	NA
UHGV-0148572_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0148572_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0148572_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0148572_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0148572_12	Structural annotation	PF10145, TIGR01760, NF008096, COG5280	NA	NA
UHGV-0148572_13	UniRef90	UniRef90_A0A556U9H5	Phage tail protein	NA
UHGV-0148572_13	eggNOG-mapper	1423767.BALU01000006_gene763	phage tail	NA
UHGV-0148572_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0148572_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0148572_14	PHROG	phrog_12493	tail protein	tail
UHGV-0148572_14	UniRef90	UniRef90_K1MRE6	Phage minor structural protein	NA
UHGV-0148572_14	eggNOG-mapper	1423790.BN53_04170	Phage minor structural protein	NA
UHGV-0148572_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0148572_14	COG	COG4926	Phage-related protein	NA
UHGV-0148572_14	Structural annotation	PF14594, PF19087, TIGR01665, NF038016, COG4926	NA	NA
UHGV-0148572_16	PHROG	phrog_26580	NA	unknown function
UHGV-0148572_16	UniRef90	UniRef90_A0A4Q0LVI9	NA	NA
UHGV-0148572_16	eggNOG-mapper	1122147.AUEH01000027_gene2733	NA	NA
UHGV-0148572_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0148572_17	UniRef90	UniRef90_UPI00105D1009	enterobactin-iron receptor	NA
UHGV-0148572_19	PHROG	phrog_16648	NA	unknown function
UHGV-0148572_20	UniRef90	UniRef90_A0A4R6CR67	XkdX family protein	NA
UHGV-0148572_20	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0148572_21	PHROG	phrog_4325	holin	lysis
UHGV-0148572_21	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0148572_23	PHROG	phrog_2609	holin	lysis
UHGV-0148572_23	UniRef90	UniRef90_A0A2V4F5N6	Phage holin	NA
UHGV-0148572_23	eggNOG-mapper	891391.LAC30SC_06455	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0148572_23	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0148572_23	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0148572_23	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0148572_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0148572_24	PHROG	phrog_291	endolysin	lysis
UHGV-0148572_24	UniRef90	UniRef90_A0A4Q0LVG2	Lysin	NA
UHGV-0148572_24	eggNOG-mapper	891391.LAC30SC_06450	hydrolase, family 25	NA
UHGV-0148572_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148572_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148572_24	Structural annotation	PF01183, NF033379, COG3757	NA	NA