UHGV-0148574

Genome information

Genome length 30,544 bps

CDS count 44

Completeness 61.57% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148574
vOTU ID	vOTU-016868
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394552
BioSample	SAMN04436763
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.12
Jumbo phage	No

Genome content
Genome length	30,544 bps
GC content	52.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.99%
Average CDS length	649.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148574_1	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0148574_1	UniRef90	UniRef90_UPI000A9F52A2	phage tail protein	NA
UHGV-0148574_1	eggNOG-mapper	906669.G8C7R8_9CAUD	NA	NA
UHGV-0148574_1	Structural annotation	PF12195	NA	NA
UHGV-0148574_2	PHROG	phrog_1119	Cor superinfection exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0148574_2	UniRef90	UniRef90_A0A7Z8BXU4	Cor protein	NA
UHGV-0148574_2	eggNOG-mapper	10713.E4WL42_BPPH8	NA	NA
UHGV-0148574_2	dbAPIS	APIS032	Superinfection exclusion, inactivates FhuA receptor.	NA
UHGV-0148574_2	Structural annotation	PF11717, NF007197, COG4568	NA	NA
UHGV-0148574_3	PHROG	phrog_425	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0148574_3	eggNOG-mapper	693444.D782_2462	NA	NA
UHGV-0148574_3	Structural annotation	PF20051	NA	NA
UHGV-0148574_4	PHROG	phrog_557	outer membrane protein	other
UHGV-0148574_4	eggNOG-mapper	371042.NG99_16015	NA	NA
UHGV-0148574_5	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0148574_5	UniRef90	UniRef90_UPI000DE6D722	phage tail protein	NA
UHGV-0148574_5	eggNOG-mapper	1168549.I6R9B3_9CAUD	Putative phage tail protein	NA
UHGV-0148574_5	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0148574_5	Pfam	PF09327	NA	DUF1983
UHGV-0148574_5	Structural annotation	PF09327, PF13550, PF16389, PF14879, NF040662, NF038116, COG4733	NA	NA
UHGV-0148574_6	PHROG	phrog_4554	tail protein	tail
UHGV-0148574_6	UniRef90	UniRef90_A0A2J0PD69	Phage tail protein	NA
UHGV-0148574_6	eggNOG-mapper	1147140.H6WRW3_9CAUD	virus tail assembly	NA
UHGV-0148574_6	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0148574_7	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0148574_7	PHROG	phrog_30	minor tail protein	tail
UHGV-0148574_7	UniRef90	UniRef90_A0A7D6Y087	C40 family peptidase	NA
UHGV-0148574_7	eggNOG-mapper	1168549.I6S1R8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0148574_7	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0148574_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0148574_7	Structural annotation	PF00877, TIGR02219, NF041370, COG0791, COG1310	NA	NA
UHGV-0148574_8	PHROG	phrog_18	minor tail protein	tail
UHGV-0148574_8	UniRef90	UniRef90_W7P380	Phage minor tail protein L	NA
UHGV-0148574_8	eggNOG-mapper	101570.Q5G8W3_9CAUD	Phage minor tail protein L	NA
UHGV-0148574_8	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0148574_8	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0148574_8	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0148574_9	PHROG	phrog_25136	NA	unknown function
UHGV-0148574_11	PHROG	phrog_14	minor tail protein	tail
UHGV-0148574_11	UniRef90	UniRef90_UPI001254DF26	phage tail protein	NA
UHGV-0148574_11	eggNOG-mapper	101570.Q5G8W6_9CAUD	Phage minor tail protein	NA
UHGV-0148574_11	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0148574_11	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0148574_12	PHROG	phrog_2891	NA	unknown function
UHGV-0148574_13	PHROG	phrog_1107	tail length tape measure protein	tail
UHGV-0148574_13	UniRef90	UniRef90_A0A2J0R4U5	TMP_3 domain-containing protein	NA
UHGV-0148574_13	eggNOG-mapper	101570.Q5G8W8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0148574_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0148574_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0148574_13	Structural annotation	PF20155, PF06120, COG5281	NA	NA
UHGV-0148574_14	eggNOG-mapper	82995.CR62_24370	NA	NA
UHGV-0148574_15	KOfam	K19160	yafO; mRNA interferase YafO [EC:3.1.-.-]	NA
UHGV-0148574_15	PHROG	phrog_1651	NA	unknown function
UHGV-0148574_15	UniRef90	UniRef90_A0A855EZX7	Toxin YafO, type II toxin-antitoxin system family protein	NA
UHGV-0148574_15	eggNOG-mapper	911008.GLAD_00701	Toxin YafO, type II toxin-antitoxin system	NA
UHGV-0148574_15	Pfam	PF13957	Toxin YafO, type II toxin-antitoxin system	YafO_toxin
UHGV-0148574_16	PHROG	phrog_35514	NA	unknown function
UHGV-0148574_17	PHROG	phrog_791	NA	unknown function
UHGV-0148574_17	UniRef90	UniRef90_UPI001253C071	NA	NA
UHGV-0148574_17	eggNOG-mapper	1147140.H6WRU2_9CAUD	NA	NA
UHGV-0148574_17	Pfam	PF19759	NA	DUF6246
UHGV-0148574_17	Structural annotation	PF19759	NA	NA
UHGV-0148574_19	KOfam	K07369	MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1 [EC:3.4.22.-]	NA
UHGV-0148574_19	PHROG	phrog_853	major tail protein	tail
UHGV-0148574_19	UniRef90	UniRef90_A0A6L3Y1Q4	Ig-like domain-containing protein	NA
UHGV-0148574_19	eggNOG-mapper	101570.Q5G8X3_9CAUD	Phage major tail protein 2	NA
UHGV-0148574_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0148574_19	Pfam	PF13927	Immunoglobulin domain	Ig_3
UHGV-0148574_20	PHROG	phrog_782	NA	unknown function
UHGV-0148574_20	UniRef90	UniRef90_Q5G8X4	Gp15	NA
UHGV-0148574_20	eggNOG-mapper	101570.Q5G8X4_9CAUD	NA	NA
UHGV-0148574_20	Structural annotation	PF12691	NA	NA
UHGV-0148574_21	UniRef90	UniRef90_Q5G8X5	Gp14	NA
UHGV-0148574_21	eggNOG-mapper	1147140.H6WRT9_9CAUD	NA	NA
UHGV-0148574_21	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0148574_22	PHROG	phrog_797	NA	unknown function
UHGV-0148574_22	UniRef90	UniRef90_Q5G8X6	Gp13	NA
UHGV-0148574_22	eggNOG-mapper	1168549.I6S1Q5_9CAUD	NA	NA
UHGV-0148574_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0148574_23	PHROG	phrog_1261	NA	unknown function
UHGV-0148574_23	UniRef90	UniRef90_A0A634WWP2	NA	NA
UHGV-0148574_23	eggNOG-mapper	101570.Q5G8X7_9CAUD	NA	NA
UHGV-0148574_24	PHROG	phrog_786	NA	unknown function
UHGV-0148574_24	UniRef90	UniRef90_A0A376F9V3	Gp11	NA
UHGV-0148574_24	eggNOG-mapper	1168549.I6S619_9CAUD	NA	NA
UHGV-0148574_25	PHROG	phrog_5877	NA	unknown function
UHGV-0148574_25	UniRef90	UniRef90_UPI001144717B	Zn-dependent oligopeptidase	NA
UHGV-0148574_25	eggNOG-mapper	1073754.G0ZNE0_9VIRU	NA	NA
UHGV-0148574_26	PHROG	phrog_771	virion structural protein	head and packaging
UHGV-0148574_26	UniRef90	UniRef90_UPI00065A3281	NA	NA
UHGV-0148574_26	eggNOG-mapper	1073754.G0ZND9_9VIRU	NA	NA
UHGV-0148574_26	Pfam	PF19774	NA	DUF6260
UHGV-0148574_26	Structural annotation	PF19774, MF_04119, NF041155, COG4834	NA	NA
UHGV-0148574_27	PHROG	phrog_766	head decoration	head and packaging
UHGV-0148574_27	UniRef90	UniRef90_G0ZND8	Decoration protein	NA
UHGV-0148574_27	eggNOG-mapper	1073754.G0ZND8_9VIRU	NA	NA
UHGV-0148574_27	Structural annotation	PF02989, COG5471	NA	NA
UHGV-0148574_28	PHROG	phrog_760	NA	unknown function
UHGV-0148574_28	eggNOG-mapper	1147140.H6WRT2_9CAUD	NA	NA
UHGV-0148574_28	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0148574_29	PHROG	phrog_758	head morphogenesis	head and packaging
UHGV-0148574_29	UniRef90	UniRef90_A0A6S5XTN9	Phage_Mu_F domain-containing protein	NA
UHGV-0148574_29	eggNOG-mapper	1147140.H6WRT1_9CAUD	Phage Mu protein F like protein	NA
UHGV-0148574_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0148574_29	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0148574_30	KOfam	K09961	NA	NA
UHGV-0148574_30	PHROG	phrog_146	portal protein	head and packaging
UHGV-0148574_30	UniRef90	UniRef90_A0A8B5ZZZ6	NA	NA
UHGV-0148574_30	eggNOG-mapper	1147140.H6WRT0_9CAUD	NA	NA
UHGV-0148574_30	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0148574_30	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0148574_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148574_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0148574_31	UniRef90	UniRef90_A0A0J5KU24	Terminase	NA
UHGV-0148574_31	eggNOG-mapper	549.BW31_01419	Phage terminase large subunit	NA
UHGV-0148574_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0148574_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0148574_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148574_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0148574_32	PHROG	phrog_546	NA	unknown function
UHGV-0148574_32	UniRef90	UniRef90_A0A377LX25	NA	NA
UHGV-0148574_32	eggNOG-mapper	716541.ECL_01324	NA	NA
UHGV-0148574_32	Pfam	PF10045	NA	DUF2280
UHGV-0148574_32	COG	COG5556	NA	NA
UHGV-0148574_32	Structural annotation	PF10045, COG5556	NA	NA
UHGV-0148574_33	PHROG	phrog_513	transposase	integration and excision
UHGV-0148574_33	UniRef90	UniRef90_A0A0P8KA74	PhageMetallopep domain-containing protein	NA
UHGV-0148574_33	eggNOG-mapper	716541.ECL_01323	NA	NA
UHGV-0148574_33	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0148574_33	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0148574_34	PHROG	phrog_6581	NA	unknown function
UHGV-0148574_34	eggNOG-mapper	716541.ECL_03204	NA	NA
UHGV-0148574_34	Structural annotation	PF06004, MF_00436, NF033216, COG1923	NA	NA
UHGV-0148574_35	eggNOG-mapper	517433.PanABDRAFT_0981	NA	NA
UHGV-0148574_36	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148574_36	UniRef90	UniRef90_A0A4R0GE47	HNHc domain-containing protein	NA
UHGV-0148574_36	eggNOG-mapper	477184.KYC_12518	HNH endonuclease	NA
UHGV-0148574_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0148574_36	Structural annotation	PF13392, PF02920	NA	NA
UHGV-0148574_37	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0148574_37	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0148574_37	UniRef90	UniRef90_A0A7L6PI23	Lysis protein	NA
UHGV-0148574_37	eggNOG-mapper	716541.ECL_03207	Bacteriophage Rz lysis protein	NA
UHGV-0148574_37	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0148574_37	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0148574_37	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0148574_38	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0148574_38	PHROG	phrog_7	endolysin	lysis
UHGV-0148574_38	UniRef90	UniRef90_W7PAC5	Lysozyme	NA
UHGV-0148574_38	eggNOG-mapper	640513.Entas_3088	Phage lysozyme	NA
UHGV-0148574_38	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0148574_38	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0148574_38	HAMAP	MF_04110	Endolysin	NA
UHGV-0148574_38	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0148574_39	PHROG	phrog_785	holin	lysis
UHGV-0148574_39	UniRef90	UniRef90_A0A0D7LSK6	Holin	NA
UHGV-0148574_39	eggNOG-mapper	173443.Q8H9G9_BPST6	Pfam:Phage_holin_3_3	NA
UHGV-0148574_39	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0148574_39	Structural annotation	PF16083	NA	NA
UHGV-0148574_40	PHROG	phrog_943	anti-termination protein Q-like	transcription regulation
UHGV-0148574_40	UniRef90	UniRef90_G8C7V7	Q antitermination protein	NA
UHGV-0148574_40	eggNOG-mapper	571.MC52_15100	NA	NA
UHGV-0148574_40	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0148574_40	Structural annotation	PF06530	NA	NA
UHGV-0148574_42	PHROG	phrog_1621	NA	unknown function
UHGV-0148574_42	eggNOG-mapper	642227.HA49_08500	NA	NA
UHGV-0148574_43	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148574_43	UniRef90	UniRef90_A0A0H3CI89	Bacteriophage lambda NinG family protein	NA
UHGV-0148574_43	eggNOG-mapper	716541.ECL_01316	Bacteriophage Lambda NinG protein	NA
UHGV-0148574_43	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0148574_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0148574_43	Structural annotation	PF05766	NA	NA
UHGV-0148574_44	PHROG	phrog_288	NA	unknown function
UHGV-0148574_44	UniRef90	UniRef90_A0A6N7KBZ0	NinE family protein	NA
UHGV-0148574_44	eggNOG-mapper	1005994.GTGU_00290	NA	NA
UHGV-0148574_44	Pfam	PF05322	NINE Protein	NinE
UHGV-0148574_44	NCBIFam	NF007245.0	NinE family protein	NA