UHGV-0148687

Genome information

vOTU vOTU-021910

Genome length 17,939 bps

CDS count 26

Completeness 79.67% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148687
vOTU ID	vOTU-021910
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_402985
BioSample	SAMN05414999
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.45
Jumbo phage	No

Genome content
Genome length	17,939 bps
GC content	52.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.78%
Average CDS length	661.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148687_2	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0148687_2	Structural annotation	PF17427	NA	NA
UHGV-0148687_3	Structural annotation	PF05435	NA	NA
UHGV-0148687_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0148687_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0148687_4	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0148687_4	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0148687_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0148687_4	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0148687_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0148687_6	UniRef90	UniRef90_A0A8F2J876	Major capsid protein	NA
UHGV-0148687_6	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0148687_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0148687_6	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0148687_7	PHROG	phrog_2248	tail protein	tail
UHGV-0148687_7	UniRef90	UniRef90_A0A7S5V1W7	Major tail protein	NA
UHGV-0148687_7	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0148687_7	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0148687_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0148687_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-0148687_8	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0148687_8	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0148687_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0148687_8	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0148687_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0148687_9	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0148687_14	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0148687_14	Structural annotation	PF12850, MF_00905, NF008359, COG5555	NA	NA
UHGV-0148687_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0148687_15	PHROG	phrog_291	endolysin	lysis
UHGV-0148687_15	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0148687_15	eggNOG-mapper	1158614.I592_01140	Glycosyl hydrolases family 25	NA
UHGV-0148687_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148687_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148687_15	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0148687_16	PHROG	phrog_199	holin	lysis
UHGV-0148687_16	UniRef90	UniRef90_A0A7K3XW11	Holin	NA
UHGV-0148687_16	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0148687_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0148687_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0148687_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0148687_17	UniRef90	UniRef90_A0A6G5XVW6	NlpC/P60 domain-containing protein	NA
UHGV-0148687_17	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0148687_18	PHROG	phrog_2150	terminase	head and packaging
UHGV-0148687_18	UniRef90	UniRef90_A0A3G8F2F5	DNA encapsidation ATPase	NA
UHGV-0148687_18	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0148687_18	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0148687_18	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA