UHGV-0148702

Genome information

Genome length 39,842 bps

CDS count 55

Completeness 99.85% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148702
vOTU ID	vOTU-008538
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_435573
BioSample	SAMN06016416
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.67
Jumbo phage	No

Genome content
Genome length	39,842 bps
GC content	33.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.16%
Average CDS length	671.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148702_1	KOfam	K11069	potD; spermidine/putrescine transport system substrate-binding protein	NA
UHGV-0148702_1	UniRef90	UniRef90_R6RVE2	Spermidine/putrescine-binding periplasmic protein	NA
UHGV-0148702_1	eggNOG-mapper	1280668.ATVT01000012_gene3203	Bacterial extracellular solute-binding protein	NA
UHGV-0148702_1	Pfam	PF13416	Bacterial extracellular solute-binding protein	SBP_bac_8
UHGV-0148702_1	COG	COG0687	Spermidine/putrescine-binding periplasmic protein	NA
UHGV-0148702_2	KOfam	K14059	int; integrase	NA
UHGV-0148702_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0148702_2	UniRef90	UniRef90_UPI001B3C717A	site-specific integrase	NA
UHGV-0148702_2	eggNOG-mapper	861454.HMPREF9099_00328	Phage integrase family	NA
UHGV-0148702_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0148702_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148702_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148702_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0148702_3	PHROG	phrog_6988	NA	unknown function
UHGV-0148702_3	UniRef90	UniRef90_A0A841TDM8	TIR domain-containing protein	NA
UHGV-0148702_3	eggNOG-mapper	445974.CLORAM_02972	NA	NA
UHGV-0148702_3	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-0148702_3	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0148702_3	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0148702_4	PHROG	phrog_419	NA	unknown function
UHGV-0148702_4	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0148702_4	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0148702_4	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0148702_4	Structural annotation	PF14083	NA	NA
UHGV-0148702_5	PHROG	phrog_7395	NA	unknown function
UHGV-0148702_5	UniRef90	UniRef90_A0A417IT12	NA	NA
UHGV-0148702_5	eggNOG-mapper	203119.Cthe_2458	NA	NA
UHGV-0148702_5	Pfam	PF14015	NA	DUF4231
UHGV-0148702_5	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0148702_5	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0148702_6	UniRef90	UniRef90_A0A348ZC97	UDP-N-acetylglucosamine kinase	NA
UHGV-0148702_6	eggNOG-mapper	246199.CUS_4649	zeta toxin	NA
UHGV-0148702_6	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0148702_6	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-0148702_6	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-0148702_7	PHROG	phrog_87	metallo-protease	other
UHGV-0148702_7	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0148702_7	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0148702_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0148702_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0148702_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0148702_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148702_8	UniRef90	UniRef90_UPI00083285BC	helix-turn-helix domain-containing protein	NA
UHGV-0148702_8	eggNOG-mapper	1408438.JADD01000021_gene375	Helix-turn-helix domain	NA
UHGV-0148702_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148702_8	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0148702_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148702_9	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0148702_9	eggNOG-mapper	1154757.Q5C_05855	NA	NA
UHGV-0148702_9	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0148702_13	UniRef90	UniRef90_UPI001B3C932B	helix-turn-helix domain-containing protein	NA
UHGV-0148702_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148702_13	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148702_18	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0148702_18	PHROG	phrog_1499	NA	unknown function
UHGV-0148702_18	UniRef90	UniRef90_UPI001B3C9718	AAA family ATPase	NA
UHGV-0148702_18	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0148702_18	Pfam	PF13476	AAA domain	AAA_23
UHGV-0148702_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0148702_18	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0148702_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148702_20	UniRef90	UniRef90_UPI001B3C5FE5	AAA family ATPase	NA
UHGV-0148702_20	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-0148702_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-0148702_20	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0148702_21	PHROG	phrog_2698	NA	unknown function
UHGV-0148702_21	UniRef90	UniRef90_UPI001B3C89FE	NA	NA
UHGV-0148702_21	eggNOG-mapper	608534.GCWU000341_02311	NA	NA
UHGV-0148702_21	Structural annotation	PF05037	NA	NA
UHGV-0148702_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0148702_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0148702_22	UniRef90	UniRef90_UPI001B3C4DBD	DEAD/DEAH box helicase	NA
UHGV-0148702_22	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0148702_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0148702_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0148702_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0148702_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0148702_22	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0148702_23	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0148702_23	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0148702_23	UniRef90	UniRef90_UPI001B3C4CA9	AAA family ATPase	NA
UHGV-0148702_23	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0148702_23	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0148702_23	Pfam	PF13481	AAA domain	AAA_25
UHGV-0148702_23	COG	COG3598	RecA-family ATPase	NA
UHGV-0148702_23	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0148702_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0148702_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148702_24	UniRef90	UniRef90_UPI001B3C90F3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0148702_24	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0148702_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0148702_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0148702_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0148702_25	Structural annotation	PF15591, MF_00667, NF000331	NA	NA
UHGV-0148702_26	Structural annotation	PF09889	NA	NA
UHGV-0148702_27	Structural annotation	PF10571	NA	NA
UHGV-0148702_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148702_29	UniRef90	UniRef90_A0A415TAG9	NA	NA
UHGV-0148702_29	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-0148702_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0148702_29	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0148702_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0148702_31	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0148702_31	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0148702_31	Structural annotation	PF07141	NA	NA
UHGV-0148702_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148702_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0148702_32	UniRef90	UniRef90_UPI001B3C8BA8	terminase family protein	NA
UHGV-0148702_32	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0148702_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0148702_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148702_32	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0148702_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0148702_33	UniRef90	UniRef90_UPI001B3C997D	phage capsid protein	NA
UHGV-0148702_33	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0148702_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0148702_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0148702_34	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-0148702_34	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0148702_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0148702_34	COG	COG2369	NA	NA
UHGV-0148702_34	Structural annotation	PF06152, COG2369	NA	NA
UHGV-0148702_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0148702_36	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-0148702_36	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0148702_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0148702_36	Structural annotation	PF06810	NA	NA
UHGV-0148702_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0148702_37	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0148702_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0148702_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0148702_38	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0148702_38	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0148702_39	PHROG	phrog_3366	NA	unknown function
UHGV-0148702_39	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0148702_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0148702_40	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0148702_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0148702_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0148702_40	Structural annotation	PF11114	NA	NA
UHGV-0148702_41	PHROG	phrog_3266	tail completion	connector
UHGV-0148702_41	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0148702_41	Structural annotation	PF20765	NA	NA
UHGV-0148702_42	PHROG	phrog_3099	NA	unknown function
UHGV-0148702_42	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0148702_42	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0148702_43	PHROG	phrog_11299	NA	unknown function
UHGV-0148702_43	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0148702_43	Structural annotation	PF10666	NA	NA
UHGV-0148702_44	PHROG	phrog_706	NA	unknown function
UHGV-0148702_44	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0148702_44	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0148702_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0148702_44	Structural annotation	PF06854	NA	NA
UHGV-0148702_45	PHROG	phrog_5319	outer membrane protein	other
UHGV-0148702_45	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0148702_45	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0148702_45	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0148702_45	COG	COG3103	NA	NA
UHGV-0148702_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0148702_46	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0148702_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0148702_47	PHROG	phrog_1194	NA	unknown function
UHGV-0148702_47	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0148702_47	Pfam	PF20458	NA	DUF6711
UHGV-0148702_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0148702_48	PHROG	phrog_18190	NA	unknown function
UHGV-0148702_48	UniRef90	UniRef90_UPI000F53DFF3	tail fiber domain-containing protein	NA
UHGV-0148702_48	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0148702_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0148702_51	PHROG	phrog_199	holin	lysis
UHGV-0148702_51	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-0148702_51	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0148702_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0148702_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0148702_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0148702_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0148702_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0148702_52	PHROG	phrog_291	endolysin	lysis
UHGV-0148702_52	UniRef90	UniRef90_R7NMS6	Glycosyl hydrolase family 25	NA
UHGV-0148702_52	eggNOG-mapper	877420.ATVW01000004_gene383	Glycosyl hydrolases family 25	NA
UHGV-0148702_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148702_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0148702_52	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148702_52	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0148702_55	KOfam	K03312	gltS; glutamate:Na+ symporter, ESS family	NA
UHGV-0148702_55	UniRef90	UniRef90_A0A4P8XXA9	Sodium/glutamate symporter	NA
UHGV-0148702_55	eggNOG-mapper	411469.EUBHAL_01061	Catalyzes the sodium-dependent transport of glutamate	NA
UHGV-0148702_55	Pfam	PF03616	Sodium/glutamate symporter	Glt_symporter
UHGV-0148702_55	NCBIFam	TIGR00210.1	sodium/glutamate symporter	NA
UHGV-0148702_55	COG	COG0786	Na+/glutamate symporter	NA
UHGV-0148702_55	HAMAP	MF_02062	Sodium/glutamate symporter [gltS]	NA