UHGV-0148777

Genome information

Genome length 33,004 bps

CDS count 45

Completeness 81.07% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148777
vOTU ID	vOTU-023122
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414462
BioSample	SAMN05414994
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.44
Jumbo phage	No

Genome content
Genome length	33,004 bps
GC content	51.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.17%
Average CDS length	686.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148777_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148777_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0148777_1	UniRef90	UniRef90_A0A385Q548	Bro-N domain-containing protein	NA
UHGV-0148777_1	eggNOG-mapper	887325.HMPREF0381_0355	Phage antirepressor protein KilAC domain	NA
UHGV-0148777_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0148777_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148777_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0148777_1	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0148777_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0148777_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0148777_2	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-0148777_4	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0148777_4	PHROG	phrog_1499	NA	unknown function
UHGV-0148777_4	UniRef90	UniRef90_A0A358QWL8	Chromosome segregation protein SMC	NA
UHGV-0148777_4	eggNOG-mapper	1140001.I571_01812	AAA domain	NA
UHGV-0148777_4	Pfam	PF13476	AAA domain	AAA_23
UHGV-0148777_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0148777_4	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0148777_5	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148777_5	UniRef90	UniRef90_F0SXE1	NA	NA
UHGV-0148777_5	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0148777_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0148777_5	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0148777_6	PHROG	phrog_2698	NA	unknown function
UHGV-0148777_6	UniRef90	UniRef90_A0A2N2CRM9	NA	NA
UHGV-0148777_6	eggNOG-mapper	1262914.BN533_01948	NA	NA
UHGV-0148777_6	Structural annotation	PF05037	NA	NA
UHGV-0148777_7	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0148777_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0148777_7	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-0148777_7	eggNOG-mapper	394503.Ccel_3307	helicase	NA
UHGV-0148777_7	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0148777_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0148777_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0148777_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0148777_7	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0148777_8	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0148777_8	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0148777_8	UniRef90	UniRef90_A0A3E3HWF9	DNA primase	NA
UHGV-0148777_8	eggNOG-mapper	645991.Sgly_0325	Primase C terminal 2 (PriCT-2)	NA
UHGV-0148777_8	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0148777_8	Pfam	PF13481	AAA domain	AAA_25
UHGV-0148777_8	COG	COG3598	RecA-family ATPase	NA
UHGV-0148777_8	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0148777_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0148777_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148777_9	UniRef90	UniRef90_R5GVZ7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0148777_9	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0148777_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0148777_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0148777_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0148777_10	Structural annotation	PF12960	NA	NA
UHGV-0148777_13	PHROG	phrog_3136	NA	unknown function
UHGV-0148777_13	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0148777_13	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0148777_13	Pfam	PF04266	ASCH domain	ASCH
UHGV-0148777_13	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0148777_13	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0148777_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148777_16	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0148777_16	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0148777_16	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0148777_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0148777_17	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0148777_17	UniRef90	UniRef90_R6DKE7	ParB domain-containing protein	NA
UHGV-0148777_17	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0148777_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0148777_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0148777_17	Pfam	PF14386	NA	DUF4417
UHGV-0148777_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0148777_17	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0148777_18	PHROG	phrog_2412	NA	unknown function
UHGV-0148777_18	UniRef90	UniRef90_A0A656EI19	NA	NA
UHGV-0148777_18	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-0148777_19	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0148777_19	eggNOG-mapper	749222.Nitsa_1820	NA	NA
UHGV-0148777_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0148777_20	PHROG	phrog_10250	NA	unknown function
UHGV-0148777_20	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-0148777_20	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0148777_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0148777_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0148777_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0148777_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0148777_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0148777_21	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148777_21	eggNOG-mapper	1032362.F6K8Q7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148777_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0148777_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0148777_22	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0148777_22	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0148777_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0148777_22	COG	COG2369	NA	NA
UHGV-0148777_22	Structural annotation	PF06152	NA	NA
UHGV-0148777_23	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0148777_23	Structural annotation	PF06810	NA	NA
UHGV-0148777_24	PHROG	phrog_283	major head protein	head and packaging
UHGV-0148777_24	UniRef90	UniRef90_A0A7G9WF89	P22 coat protein	NA
UHGV-0148777_24	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0148777_24	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0148777_24	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0148777_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0148777_26	Structural annotation	PF20536	NA	NA
UHGV-0148777_27	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0148777_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0148777_27	Structural annotation	PF11114	NA	NA
UHGV-0148777_28	PHROG	phrog_3266	tail completion	connector
UHGV-0148777_28	eggNOG-mapper	1235792.C808_05372	NA	NA
UHGV-0148777_28	Structural annotation	PF12691	NA	NA
UHGV-0148777_29	PHROG	phrog_3099	NA	unknown function
UHGV-0148777_29	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0148777_29	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0148777_30	PHROG	phrog_11299	NA	unknown function
UHGV-0148777_30	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0148777_30	Structural annotation	PF10666	NA	NA
UHGV-0148777_31	PHROG	phrog_706	NA	unknown function
UHGV-0148777_31	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0148777_31	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0148777_31	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0148777_31	Structural annotation	PF06854	NA	NA
UHGV-0148777_32	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0148777_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0148777_32	eggNOG-mapper	1120746.CCNL01000014_gene2105	tape measure	NA
UHGV-0148777_32	COG	COG1511	NA	NA
UHGV-0148777_33	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0148777_33	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0148777_34	PHROG	phrog_13879	NA	unknown function
UHGV-0148777_34	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0148777_35	PHROG	phrog_341	major tail protein	tail
UHGV-0148777_35	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0148777_35	COG	COG5492	NA	NA
UHGV-0148777_37	UniRef90	UniRef90_R6NK75	Surface antigen BspA-like	NA
UHGV-0148777_37	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0148777_37	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0148777_39	PHROG	phrog_27545	NA	unknown function
UHGV-0148777_39	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0148777_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0148777_39	COG	COG3397	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains	NA
UHGV-0148777_40	PHROG	phrog_1863	NA	unknown function
UHGV-0148777_40	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA
UHGV-0148777_42	PHROG	phrog_36029	NA	unknown function
UHGV-0148777_42	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0148777_42	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0148777_42	Structural annotation	PF09682	NA	NA
UHGV-0148777_43	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0148777_43	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0148777_43	UniRef90	UniRef90_R6NC85	M48 family peptidase	NA
UHGV-0148777_43	eggNOG-mapper	33035.JPJF01000048_gene719	Peptidase family M23	NA
UHGV-0148777_43	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0148777_43	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0148777_45	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0148777_45	UniRef90	UniRef90_A0A7V6MY66	Abi family protein (Fragment)	NA
UHGV-0148777_45	eggNOG-mapper	469615.FGAG_01235	Abi-like protein	NA
UHGV-0148777_45	PADLOC	AbiD	AbiD	Abi
UHGV-0148777_45	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0148777_45	COG	COG4823	Abortive infection bacteriophage resistance protein	NA