UHGV-0148792

Genome information

Genome length 38,626 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148792
vOTU ID	vOTU-009100
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_401059
BioSample	SAMN05356882
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.18
Jumbo phage	No

Genome content
Genome length	38,626 bps
GC content	56.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.17%
Average CDS length	567.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148792_2	Pfam	PF01719	Plasmid replication protein	Rep_2
UHGV-0148792_5	UniRef90	UniRef90_A0A355W634	Zot domain-containing protein	NA
UHGV-0148792_7	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0148792_7	PHROG	phrog_4646	transposase	integration and excision
UHGV-0148792_7	UniRef90	UniRef90_A0A3D4E163	IS30 family transposase	NA
UHGV-0148792_7	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0148792_7	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0148792_7	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0148792_7	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0148792_7	Structural annotation	PF13358, PF13384, NF033563, COG2826	NA	NA
UHGV-0148792_8	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0148792_8	COG	COG2369	NA	NA
UHGV-0148792_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148792_11	PHROG	phrog_95	integrase	integration and excision
UHGV-0148792_11	UniRef90	UniRef90_UPI001D0F283A	recombinase family protein	NA
UHGV-0148792_11	eggNOG-mapper	718252.FP2_01160	Resolvase, N terminal domain	NA
UHGV-0148792_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148792_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-0148792_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0148792_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148792_11	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0148792_12	PHROG	phrog_38135	NA	unknown function
UHGV-0148792_12	UniRef90	UniRef90_A0A1Q6T359	NA	NA
UHGV-0148792_12	eggNOG-mapper	411471.SUBVAR_05869	repeat protein	NA
UHGV-0148792_12	Pfam	PF14020	NA	DUF4236
UHGV-0148792_12	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0148792_12	Structural annotation	PF14020	NA	NA
UHGV-0148792_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0148792_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0148792_13	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-0148792_13	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0148792_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0148792_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0148792_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0148792_13	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0148792_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0148792_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148792_14	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0148792_14	eggNOG-mapper	796942.HMPREF9623_01770	NA	NA
UHGV-0148792_14	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0148792_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148792_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0148792_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148792_27	UniRef90	UniRef90_UPI001C02C5E0	NA	NA
UHGV-0148792_27	eggNOG-mapper	718252.FP2_16510	NA	NA
UHGV-0148792_27	Structural annotation	PF01446	NA	NA
UHGV-0148792_28	PHROG	phrog_36399	NA	unknown function
UHGV-0148792_29	PHROG	phrog_8470	NA	unknown function
UHGV-0148792_29	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0148792_29	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0148792_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0148792_30	PHROG	phrog_15609	NA	unknown function
UHGV-0148792_30	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0148792_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0148792_33	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0148792_33	Structural annotation	TIGR01636	NA	NA
UHGV-0148792_35	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148792_35	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0148792_35	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0148792_36	PHROG	phrog_1066	NA	unknown function
UHGV-0148792_36	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0148792_36	AcrCatalog	cluster_154855	NA	NA
UHGV-0148792_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148792_37	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0148792_37	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0148792_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148792_37	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0148792_38	PHROG	phrog_104	portal protein	head and packaging
UHGV-0148792_38	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0148792_38	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148792_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0148792_39	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0148792_39	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0148792_39	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0148792_39	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0148792_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0148792_41	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0148792_41	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0148792_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0148792_41	Structural annotation	PF06810	NA	NA
UHGV-0148792_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0148792_42	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0148792_42	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0148792_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148792_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0148792_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0148792_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0148792_44	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0148792_44	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0148792_44	Structural annotation	PF09355	NA	NA
UHGV-0148792_45	PHROG	phrog_501	head closure Hc1	connector
UHGV-0148792_45	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0148792_45	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0148792_46	PHROG	phrog_387	neck protein	connector
UHGV-0148792_46	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0148792_47	PHROG	phrog_123	tail terminator	connector
UHGV-0148792_47	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0148792_47	eggNOG-mapper	1231377.C426_1732	NA	NA
UHGV-0148792_47	Structural annotation	PF06141	NA	NA
UHGV-0148792_48	PHROG	phrog_117	major tail protein	tail
UHGV-0148792_48	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0148792_48	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0148792_48	COG	COG5492	NA	NA
UHGV-0148792_48	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0148792_49	PHROG	phrog_1526	NA	unknown function
UHGV-0148792_49	UniRef90	UniRef90_D2BQF7	NA	NA
UHGV-0148792_49	eggNOG-mapper	879308.HMPREF9130_1240	NA	NA
UHGV-0148792_50	PHROG	phrog_1633	NA	unknown function
UHGV-0148792_50	UniRef90	UniRef90_UPI000986795C	NA	NA
UHGV-0148792_50	eggNOG-mapper	883110.HMPREF9260_00651	NA	NA
UHGV-0148792_50	Structural annotation	PF17318	NA	NA
UHGV-0148792_51	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0148792_51	UniRef90	UniRef90_A0A1C5MMN2	Phage-related protein	NA
UHGV-0148792_51	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0148792_51	COG	COG1511	NA	NA
UHGV-0148792_51	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0148792_52	PHROG	phrog_1194	NA	unknown function
UHGV-0148792_52	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0148792_52	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0148792_53	PHROG	phrog_18190	NA	unknown function
UHGV-0148792_53	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0148792_53	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-0148792_54	PHROG	phrog_18444	NA	unknown function
UHGV-0148792_54	UniRef90	UniRef90_UPI0011788049	peptide chain release factor 2	NA
UHGV-0148792_54	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0148792_56	Structural annotation	PF12245	NA	NA
UHGV-0148792_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0148792_58	PHROG	phrog_291	endolysin	lysis
UHGV-0148792_58	UniRef90	UniRef90_A0A367G061	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0148792_58	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0148792_58	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0148792_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148792_58	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148792_58	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0148792_59	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0148792_59	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0148792_59	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0148792_59	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0148792_60	PHROG	phrog_4105	NA	unknown function
UHGV-0148792_60	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0148792_61	PHROG	phrog_1129	holin	lysis
UHGV-0148792_61	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0148792_61	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0148792_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0148792_61	Structural annotation	PF06946	NA	NA