UHGV-0148846

Genome information

vOTU vOTU-019454

Genome length 43,446 bps

CDS count 79

Completeness 74.71% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148846
vOTU ID	vOTU-019454
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_433691
BioSample	SAMN06018973
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.7
Jumbo phage	No

Genome content
Genome length	43,446 bps
GC content	39.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	86.82%
Average CDS length	478.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148846_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0148846_1	PHROG	phrog_216	integrase	integration and excision
UHGV-0148846_1	UniRef90	UniRef90_A0A173SU46	Tyrosine recombinase XerD	NA
UHGV-0148846_1	eggNOG-mapper	290402.Cbei_1373	phage integrase family	NA
UHGV-0148846_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148846_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148846_1	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0148846_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0148846_5	UniRef90	UniRef90_A0A173UEE2	Predicted transcriptional regulator	NA
UHGV-0148846_5	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0148846_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148846_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0148846_5	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0148846_7	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0148846_7	Structural annotation	PF16677	NA	NA
UHGV-0148846_9	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0148846_9	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0148846_9	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0148846_9	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0148846_9	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0148846_9	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0148846_11	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0148846_13	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0148846_16	Structural annotation	PF19865	NA	NA
UHGV-0148846_21	Pfam	PF10122	NA	Mu-like_Com
UHGV-0148846_21	COG	COG4416	Mu-like prophage FluMu protein Com	NA
UHGV-0148846_21	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0148846_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0148846_23	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0148846_23	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0148846_23	COG	COG5410	NA	NA
UHGV-0148846_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0148846_24	PHROG	phrog_11237	NA	unknown function
UHGV-0148846_24	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-0148846_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0148846_25	UniRef90	UniRef90_A0A318EK76	SPP1 family phage portal protein	NA
UHGV-0148846_25	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148846_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0148846_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0148846_26	Structural annotation	PF14265	NA	NA
UHGV-0148846_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0148846_27	UniRef90	UniRef90_A0A1Q9J768	Ig-like_bact domain-containing protein	NA
UHGV-0148846_27	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-0148846_27	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0148846_27	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0148846_31	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0148846_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0148846_32	PHROG	phrog_1233	NA	unknown function
UHGV-0148846_32	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0148846_32	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0148846_33	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0148846_33	AcrCatalog	cluster_24841	NA	NA
UHGV-0148846_33	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0148846_34	Structural annotation	PF05657	NA	NA
UHGV-0148846_35	PHROG	phrog_158	major tail protein	tail
UHGV-0148846_35	UniRef90	UniRef90_A0A3A6HES5	Phage tail protein	NA
UHGV-0148846_35	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0148846_35	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0148846_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0148846_38	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0148846_38	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0148846_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0148846_39	UniRef90	UniRef90_A0A173UG79	RHH_1 domain-containing protein	NA
UHGV-0148846_39	eggNOG-mapper	658655.HMPREF0988_00909	NA	NA
UHGV-0148846_39	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0148846_39	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0148846_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148846_41	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0148846_41	UniRef90	UniRef90_A0A292SST5	AntA domain-containing protein	NA
UHGV-0148846_41	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0148846_41	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0148846_41	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0148846_41	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0148846_42	PHROG	phrog_2546	NA	unknown function
UHGV-0148846_42	eggNOG-mapper	1391647.AVSV01000021_gene2233	NA	NA
UHGV-0148846_43	PHROG	phrog_1194	NA	unknown function
UHGV-0148846_43	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0148846_43	Pfam	PF20458	NA	DUF6711
UHGV-0148846_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0148846_44	PHROG	phrog_6616	tail protein	tail
UHGV-0148846_44	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0148846_44	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0148846_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0148846_45	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0148846_46	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0148846_46	Structural annotation	PF14600	NA	NA
UHGV-0148846_47	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-0148846_48	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-0148846_49	PHROG	phrog_4105	NA	unknown function
UHGV-0148846_49	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-0148846_50	PHROG	phrog_443	holin	lysis
UHGV-0148846_50	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-0148846_50	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0148846_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0148846_50	Structural annotation	PF16945	NA	NA
UHGV-0148846_51	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0148846_51	PHROG	phrog_2649	endolysin	lysis
UHGV-0148846_51	UniRef90	UniRef90_A0A7X5C6M9	Peptidase_M15_4 domain-containing protein	NA
UHGV-0148846_51	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0148846_51	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0148846_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0148846_51	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0148846_52	PHROG	phrog_13890	NA	unknown function
UHGV-0148846_54	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0148846_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0148846_54	UniRef90	UniRef90_B0G4E1	DNA-binding helix-turn-helix protein	NA
UHGV-0148846_54	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0148846_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148846_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0148846_55	eggNOG-mapper	97139.C824_03109	NA	NA
UHGV-0148846_56	PHROG	phrog_13890	NA	unknown function
UHGV-0148846_56	UniRef90	UniRef90_A0A849XQQ9	NA	NA
UHGV-0148846_56	eggNOG-mapper	411902.CLOBOL_03783	NA	NA
UHGV-0148846_56	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0148846_59	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-0148846_61	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0148846_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148846_61	UniRef90	UniRef90_UPI0015702B9F	helix-turn-helix domain-containing protein	NA
UHGV-0148846_61	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0148846_61	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0148846_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0148846_61	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0148846_71	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0148846_71	UniRef90	UniRef90_A0A373MZQ3	NA	NA
UHGV-0148846_71	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0148846_71	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0148846_71	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0148846_71	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0148846_72	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148846_72	UniRef90	UniRef90_A0A174JL72	NA	NA
UHGV-0148846_72	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-0148846_72	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0148846_72	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0148846_75	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0148846_75	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0148846_75	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148846_75	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0148846_75	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0148846_75	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148846_75	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148846_75	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0148846_77	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0148846_77	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0148846_77	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148846_77	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-0148846_77	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0148846_77	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148846_77	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0148846_78	PHROG	phrog_2600	NA	unknown function
UHGV-0148846_78	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA