UHGV-0148874

Genome information

Genome length 56,503 bps

CDS count 93

Completeness 98.05% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148874
vOTU ID	vOTU-013135
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_421845
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.07
Jumbo phage	No

Genome content
Genome length	56,503 bps
GC content	48.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	84.20%
Average CDS length	513.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148874_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0148874_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0148874_1	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0148874_1	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0148874_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0148874_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0148874_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0148874_2	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0148874_2	Pfam	PF19808	NA	DUF6291
UHGV-0148874_2	Structural annotation	PF19808	NA	NA
UHGV-0148874_3	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0148874_3	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0148874_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0148874_3	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0148874_3	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0148874_3	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0148874_11	Structural annotation	PF04319, COG4991	NA	NA
UHGV-0148874_12	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0148874_12	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-0148874_12	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0148874_12	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0148874_13	Structural annotation	PF16677	NA	NA
UHGV-0148874_15	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0148874_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0148874_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0148874_17	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0148874_17	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0148874_17	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0148874_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0148874_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0148874_17	Structural annotation	PF01507, MF_00064, NF003587, COG0175	NA	NA
UHGV-0148874_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148874_20	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0148874_20	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0148874_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0148874_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0148874_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0148874_23	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148874_23	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0148874_23	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0148874_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0148874_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0148874_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0148874_23	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0148874_24	PHROG	phrog_28936	NA	unknown function
UHGV-0148874_24	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0148874_24	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0148874_25	PHROG	phrog_18107	NA	unknown function
UHGV-0148874_25	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0148874_25	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0148874_25	Structural annotation	PF05037	NA	NA
UHGV-0148874_26	eggNOG-mapper	411483.FAEPRAA2165_00452	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0148874_26	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0148874_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0148874_27	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148874_27	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0148874_27	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0148874_27	Pfam	PF13479	AAA domain	AAA_24
UHGV-0148874_27	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0148874_29	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0148874_29	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0148874_29	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0148874_29	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0148874_29	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0148874_29	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0148874_30	Structural annotation	PF14143	NA	NA
UHGV-0148874_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0148874_31	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0148874_34	Structural annotation	PF10922	NA	NA
UHGV-0148874_35	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0148874_35	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0148874_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0148874_36	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0148874_36	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0148874_36	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0148874_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148874_39	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0148874_39	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0148874_40	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148874_40	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0148874_40	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0148874_40	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0148874_40	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0148874_40	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0148874_40	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0148874_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0148874_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0148874_42	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0148874_42	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0148874_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-0148874_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0148874_42	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0148874_43	Pfam	PF04448	NA	DUF551
UHGV-0148874_44	Structural annotation	PF07878	NA	NA
UHGV-0148874_45	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0148874_45	PHROG	phrog_3757	NA	unknown function
UHGV-0148874_45	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0148874_45	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0148874_45	PADLOC	IetA_00002	NA	ietAS
UHGV-0148874_45	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0148874_45	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0148874_45	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0148874_46	Structural annotation	MF_00273	NA	NA
UHGV-0148874_47	Pfam	PF04448	NA	DUF551
UHGV-0148874_48	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0148874_49	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0148874_50	PHROG	phrog_16490	NA	unknown function
UHGV-0148874_50	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0148874_55	PHROG	phrog_1454	NA	unknown function
UHGV-0148874_55	UniRef90	UniRef90_A0A0D1WCB4	Phosphomannomutase	NA
UHGV-0148874_55	eggNOG-mapper	742740.HMPREF9474_04325	NA	NA
UHGV-0148874_56	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0148874_57	PHROG	phrog_15303	NA	unknown function
UHGV-0148874_57	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0148874_59	KOfam	K07273	acm; lysozyme	NA
UHGV-0148874_59	PHROG	phrog_291	endolysin	lysis
UHGV-0148874_59	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0148874_59	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0148874_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0148874_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0148874_59	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0148874_60	PHROG	phrog_1382	NA	unknown function
UHGV-0148874_60	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0148874_61	UniRef90	UniRef90_UPI000C76580F	holin	NA
UHGV-0148874_62	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0148874_63	PHROG	phrog_18725	NA	unknown function
UHGV-0148874_63	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0148874_64	PHROG	phrog_13879	NA	unknown function
UHGV-0148874_64	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0148874_64	Pfam	PF19789	NA	DUF6273
UHGV-0148874_64	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0148874_65	PHROG	phrog_1194	NA	unknown function
UHGV-0148874_65	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0148874_65	Pfam	PF20458	NA	DUF6711
UHGV-0148874_65	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0148874_66	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0148874_66	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0148874_66	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0148874_66	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0148874_67	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0148874_68	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0148874_68	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0148874_68	Pfam	PF16478	NA	DUF5055
UHGV-0148874_68	Structural annotation	PF16478	NA	NA
UHGV-0148874_69	PHROG	phrog_158	major tail protein	tail
UHGV-0148874_69	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0148874_69	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0148874_69	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0148874_70	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0148874_71	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0148874_72	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0148874_73	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0148874_73	Structural annotation	TIGR01560	NA	NA
UHGV-0148874_74	PHROG	phrog_29	major head protein	head and packaging
UHGV-0148874_74	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0148874_74	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0148874_74	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0148874_74	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0148874_75	PHROG	phrog_909	major head protein	head and packaging
UHGV-0148874_77	PHROG	phrog_64	portal protein	head and packaging
UHGV-0148874_77	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0148874_77	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0148874_77	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0148874_77	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0148874_79	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0148874_79	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0148874_79	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0148874_79	COG	COG5410	NA	NA
UHGV-0148874_79	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0148874_80	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0148874_82	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148874_82	Structural annotation	PF02796, PF15653	NA	NA
UHGV-0148874_83	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0148874_83	PHROG	phrog_95	integrase	integration and excision
UHGV-0148874_83	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0148874_83	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0148874_83	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0148874_83	Pfam	PF07508	Recombinase	Recombinase
UHGV-0148874_83	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0148874_83	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0148874_85	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0148874_86	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148874_86	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0148874_86	UniRef90	UniRef90_UPI0011277860	phage regulatory protein/antirepressor Ant	NA
UHGV-0148874_86	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0148874_86	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0148874_86	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148874_86	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0148874_86	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0148874_88	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0148874_92	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0148874_92	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA