UHGV-0148882

Genome information

Genome length 39,505 bps

CDS count 62

Completeness 75.09% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0148882
vOTU ID	vOTU-027349
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_397244
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.36
Jumbo phage	No

Genome content
Genome length	39,505 bps
GC content	57.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.53%
Average CDS length	587.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0148882_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0148882_2	PHROG	phrog_19265	NA	unknown function
UHGV-0148882_2	UniRef90	UniRef90_W4N9H3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148882_2	eggNOG-mapper	1435051.BMOU_0757	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0148882_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0148882_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0148882_2	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0148882_3	PHROG	phrog_263	holin	lysis
UHGV-0148882_3	UniRef90	UniRef90_E0Q7A8	Putative holin, SPP1 family	NA
UHGV-0148882_3	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0148882_3	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0148882_4	PHROG	phrog_1397	NA	unknown function
UHGV-0148882_4	UniRef90	UniRef90_A0A6N2T369	PRTRC system protein E	NA
UHGV-0148882_4	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0148882_5	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0148882_6	PHROG	phrog_15074	NA	unknown function
UHGV-0148882_6	UniRef90	UniRef90_W4NB29	Putative antifreeze protein	NA
UHGV-0148882_6	eggNOG-mapper	1435051.BMOU_0764	nuclear chromosome segregation	NA
UHGV-0148882_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0148882_7	PHROG	phrog_1885	minor tail protein	tail
UHGV-0148882_7	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0148882_7	eggNOG-mapper	1435051.BMOU_0765	NA	NA
UHGV-0148882_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0148882_8	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0148882_8	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0148882_8	eggNOG-mapper	1435051.BMOU_0766	NA	NA
UHGV-0148882_8	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0148882_9	PHROG	phrog_5577	minor tail protein	tail
UHGV-0148882_9	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0148882_9	eggNOG-mapper	1435051.BMOU_0767	NA	NA
UHGV-0148882_9	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0148882_10	PHROG	phrog_5448	tail length tape measure protein	tail
UHGV-0148882_10	UniRef90	UniRef90_A0A1X3A9R3	Cell surface protein	NA
UHGV-0148882_10	eggNOG-mapper	1435051.BMOU_0768	phage tail tape measure protein	NA
UHGV-0148882_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0148882_10	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0148882_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0148882_10	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0148882_10	Structural annotation	PF20155, PF09486, TIGR02971, COG3953, COG3941, COG1579	NA	NA
UHGV-0148882_11	eggNOG-mapper	1435051.BMOU_0770	NA	NA
UHGV-0148882_12	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0148882_12	eggNOG-mapper	1435051.BMOU_0771	NA	NA
UHGV-0148882_13	PHROG	phrog_476	major tail protein	tail
UHGV-0148882_13	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0148882_13	eggNOG-mapper	1435051.BMOU_0772	NA	NA
UHGV-0148882_13	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0148882_14	eggNOG-mapper	1435051.BMOU_0773	NA	NA
UHGV-0148882_14	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0148882_15	eggNOG-mapper	1435051.BMOU_0774	NA	NA
UHGV-0148882_15	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0148882_16	eggNOG-mapper	1435051.BMOU_0775	NA	NA
UHGV-0148882_17	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0148882_17	UniRef90	UniRef90_W4N9G5	Mobile element protein	NA
UHGV-0148882_17	eggNOG-mapper	1435051.BMOU_0776	NA	NA
UHGV-0148882_17	Structural annotation	TIGR02215	NA	NA
UHGV-0148882_18	KOfam	K06904	NA	NA
UHGV-0148882_18	PHROG	phrog_3244	head maturation protease	head and packaging
UHGV-0148882_18	UniRef90	UniRef90_W4N9C2	Phage major capsid protein	NA
UHGV-0148882_18	eggNOG-mapper	1435051.BMOU_0777	Phage capsid family	NA
UHGV-0148882_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0148882_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0148882_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0148882_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0148882_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0148882_19	UniRef90	UniRef90_W4N9J1	PE-PGRS family protein	NA
UHGV-0148882_19	eggNOG-mapper	1435051.BMOU_0778	Phage portal protein	NA
UHGV-0148882_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0148882_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0148882_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0148882_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0148882_21	UniRef90	UniRef90_W4NAK9	Terminase	NA
UHGV-0148882_21	eggNOG-mapper	1435051.BMOU_0780	Phage Terminase	NA
UHGV-0148882_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0148882_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0148882_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0148882_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0148882_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0148882_22	UniRef90	UniRef90_A0A1X3A9X3	Terminase	NA
UHGV-0148882_22	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0148882_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0148882_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0148882_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0148882_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0148882_23	eggNOG-mapper	1394176.AWUO01000014_gene667	NA	NA
UHGV-0148882_24	PHROG	phrog_908	NA	unknown function
UHGV-0148882_24	UniRef90	UniRef90_UPI001F29D6CA	PhnA protein	NA
UHGV-0148882_24	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0148882_24	Structural annotation	COG0789	NA	NA
UHGV-0148882_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0148882_26	UniRef90	UniRef90_A0A413KAN3	MazG domain-containing protein	NA
UHGV-0148882_26	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0148882_26	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0148882_26	Structural annotation	PF12643, MF_01020, NF001611, COG0140	NA	NA
UHGV-0148882_30	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0148882_30	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0148882_33	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0148882_33	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0148882_33	Structural annotation	PF01815	NA	NA
UHGV-0148882_34	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0148882_34	eggNOG-mapper	1435051.BMOU_0785	NA	NA
UHGV-0148882_34	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0148882_35	UniRef90	UniRef90_UPI00148555DB	zinc-ribbon domain-containing protein	NA
UHGV-0148882_36	UniRef90	UniRef90_UPI0018C32F08	permease	NA
UHGV-0148882_43	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0148882_43	UniRef90	UniRef90_W4N9I2	Gp86	NA
UHGV-0148882_43	eggNOG-mapper	1435051.BMOU_0792	NA	NA
UHGV-0148882_43	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0148882_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0148882_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0148882_44	UniRef90	UniRef90_W4N9D7	Single-stranded DNA-binding protein	NA
UHGV-0148882_44	eggNOG-mapper	1435051.BMOU_0793	Single-strand binding protein family	NA
UHGV-0148882_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0148882_44	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0148882_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0148882_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0148882_44	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0148882_45	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0148882_45	UniRef90	UniRef90_W4N9K5	Putative phage protein	NA
UHGV-0148882_45	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0148882_45	Pfam	PF03837	RecT family	RecT
UHGV-0148882_45	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0148882_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0148882_45	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0148882_46	eggNOG-mapper	1435051.BMOU_0795	NA	NA
UHGV-0148882_47	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0148882_47	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-0148882_47	eggNOG-mapper	104623.Ser39006_02605	methyltransferase	NA
UHGV-0148882_47	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0148882_47	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0148882_47	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0148882_47	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0148882_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0148882_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0148882_50	UniRef90	UniRef90_A0A412K8X8	Phage antirepressor Ant	NA
UHGV-0148882_50	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0148882_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0148882_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0148882_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0148882_50	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0148882_55	UniRef90	UniRef90_UPI000D78BA09	helix-turn-helix transcriptional regulator	NA
UHGV-0148882_55	eggNOG-mapper	1687.BCOR_0992	NA	NA
UHGV-0148882_56	UniRef90	UniRef90_UPI00107675BE	helix-turn-helix domain-containing protein	NA
UHGV-0148882_56	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0148882_56	Pfam	PF08667	BetR domain	BetR
UHGV-0148882_56	Structural annotation	PF08667, MF_00535, NF041677, COG1476	NA	NA
UHGV-0148882_57	UniRef90	UniRef90_UPI0010769C62	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0148882_57	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0148882_57	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0148882_58	UniRef90	UniRef90_W4NAH9	Peptidoglycan associated protein	NA
UHGV-0148882_58	eggNOG-mapper	1435051.BMOU_0748	serine threonine protein kinase	NA
UHGV-0148882_58	COG	COG2815	PASTA domain, binds beta-lactams	NA
UHGV-0148882_59	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0148882_60	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0148882_60	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-0148882_61	KOfam	K14059	int; integrase	NA
UHGV-0148882_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0148882_61	UniRef90	UniRef90_UPI00080B8D11	site-specific integrase	NA
UHGV-0148882_61	eggNOG-mapper	1435051.BMOU_0751	Phage integrase family	NA
UHGV-0148882_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0148882_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0148882_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0148882_61	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA