UHGV-0149061

Genome information

Genome length 32,181 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149061
vOTU ID	vOTU-046118
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_410020
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.51
Jumbo phage	No

Genome content
Genome length	32,181 bps
GC content	56.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.88%
Average CDS length	609.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149061_1	UniRef90	UniRef90_UPI001C3D3A75	integration host factor	NA
UHGV-0149061_1	eggNOG-mapper	445975.COLSTE_02174	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0149061_1	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0149061_1	COG	COG0099	Ribosomal protein S13	NA
UHGV-0149061_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149061_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149061_3	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-0149061_3	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0149061_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149061_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149061_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149061_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149061_3	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0149061_4	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0149061_4	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0149061_4	UniRef90	UniRef90_A0A374TU31	dUTP diphosphatase	NA
UHGV-0149061_4	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0149061_4	Pfam	PF00692	dUTPase	dUTPase
UHGV-0149061_4	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0149061_4	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0149061_4	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0149061_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149061_5	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0149061_5	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0149061_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0149061_6	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149061_6	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-0149061_6	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0149061_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149061_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149061_7	PHROG	phrog_1066	NA	unknown function
UHGV-0149061_7	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0149061_7	Structural annotation	TIGR01558	NA	NA
UHGV-0149061_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149061_8	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-0149061_8	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0149061_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149061_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149061_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149061_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149061_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149061_9	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-0149061_9	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0149061_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149061_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149061_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149061_10	KOfam	K06904	NA	NA
UHGV-0149061_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0149061_10	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-0149061_10	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0149061_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0149061_10	COG	COG3740	Phage head maturation protease	NA
UHGV-0149061_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0149061_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149061_11	UniRef90	UniRef90_A0A4Q2K3E6	Phage major capsid protein	NA
UHGV-0149061_11	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0149061_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149061_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149061_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149061_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149061_12	PHROG	phrog_5223	neck protein	connector
UHGV-0149061_12	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-0149061_12	eggNOG-mapper	1444310.JANV01000004_gene2679	NA	NA
UHGV-0149061_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0149061_13	UniRef90	UniRef90_A0A6N7RLQ4	Phage head-tail adapter protein	NA
UHGV-0149061_13	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0149061_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149061_14	UniRef90	UniRef90_UPI00148B2708	HK97 gp10 family phage protein	NA
UHGV-0149061_14	eggNOG-mapper	1220589.CD32_00820	NA	NA
UHGV-0149061_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0149061_15	eggNOG-mapper	887929.HMP0721_1261	NA	NA
UHGV-0149061_15	Structural annotation	PF05657	NA	NA
UHGV-0149061_16	PHROG	phrog_88	major tail protein	tail
UHGV-0149061_16	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0149061_16	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0149061_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0149061_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0149061_17	Structural annotation	PF12363	NA	NA
UHGV-0149061_19	PHROG	phrog_23464	NA	unknown function
UHGV-0149061_19	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0149061_19	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0149061_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0149061_19	Structural annotation	COG5280	NA	NA
UHGV-0149061_20	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0149061_20	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0149061_20	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0149061_20	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0149061_20	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0149061_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0149061_20	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0149061_21	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0149061_21	UniRef90	UniRef90_A0A374TT20	Prophage_tail domain-containing protein	NA
UHGV-0149061_21	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0149061_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0149061_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0149061_21	COG	COG4926	Phage-related protein	NA
UHGV-0149061_21	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0149061_22	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0149061_23	PHROG	phrog_19280	NA	unknown function
UHGV-0149061_23	UniRef90	UniRef90_A0A414EU89	NA	NA
UHGV-0149061_23	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0149061_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0149061_23	Structural annotation	PF10651	NA	NA
UHGV-0149061_24	PHROG	phrog_17147	NA	unknown function
UHGV-0149061_24	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0149061_24	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0149061_24	Structural annotation	PF21430	NA	NA
UHGV-0149061_26	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0149061_26	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0149061_26	UniRef90	UniRef90_A0A4Q2K0U8	Reverse transcriptase domain-containing protein	NA
UHGV-0149061_26	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0149061_26	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0149061_26	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0149061_26	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0149061_26	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0149061_28	PHROG	phrog_199	holin	lysis
UHGV-0149061_28	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-0149061_28	eggNOG-mapper	1111121.HMPREF1247_0856	Bacteriophage holin family	NA
UHGV-0149061_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0149061_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0149061_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0149061_29	UniRef90	UniRef90_A0A414EUJ7	Peptidase_C39_2 domain-containing protein	NA
UHGV-0149061_29	eggNOG-mapper	1219626.HMPREF1639_05830	Papain-like cysteine protease AvrRpt2	NA
UHGV-0149061_29	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0149061_29	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0149061_29	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0149061_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0149061_30	PHROG	phrog_291	endolysin	lysis
UHGV-0149061_30	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0149061_30	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0149061_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0149061_30	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0149061_30	COG	COG1388	LysM repeat	NA
UHGV-0149061_30	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0149061_31	eggNOG-mapper	1203602.HMPREF1527_01098	NA	NA
UHGV-0149061_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0149061_32	PHROG	phrog_95	integrase	integration and excision
UHGV-0149061_32	UniRef90	UniRef90_UPI001314BC37	recombinase family protein	NA
UHGV-0149061_32	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0149061_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0149061_32	Pfam	PF07508	Recombinase	Recombinase
UHGV-0149061_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0149061_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149061_32	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0149061_33	PHROG	phrog_17572	NA	unknown function
UHGV-0149061_33	UniRef90	UniRef90_Q9AZF7	Orf3	NA
UHGV-0149061_33	eggNOG-mapper	272623.L104552	NA	NA
UHGV-0149061_33	AcrCatalog	cluster_25152	NA	NA
UHGV-0149061_33	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0149061_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0149061_34	UniRef90	UniRef90_A0A4Q2K3G5	XRE family transcriptional regulator	NA
UHGV-0149061_34	eggNOG-mapper	742742.HMPREF9452_01329	Helix-turn-helix	NA
UHGV-0149061_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149061_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0149061_34	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0149061_35	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0149061_35	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0149061_35	UniRef90	UniRef90_T0ZXX9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0149061_35	eggNOG-mapper	439375.Oant_0669	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149061_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149061_35	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0149061_35	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0149061_38	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0149061_41	PHROG	phrog_24189	NA	unknown function
UHGV-0149061_41	UniRef90	UniRef90_A0A4Q2K0F6	NA	NA
UHGV-0149061_41	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0149061_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0149061_41	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0149061_43	PHROG	phrog_24658	NA	unknown function
UHGV-0149061_43	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0149061_46	PHROG	phrog_236	nucleotide kinase	other
UHGV-0149061_46	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-0149061_46	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0149061_46	Pfam	PF11753	NA	DUF3310
UHGV-0149061_46	Structural annotation	PF11753	NA	NA
UHGV-0149061_49	KOfam	K14059	int; integrase	NA
UHGV-0149061_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0149061_49	UniRef90	UniRef90_A0A4Q2K1M9	Site-specific integrase	NA
UHGV-0149061_49	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0149061_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149061_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149061_49	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0149061_50	COG	COG0099	Ribosomal protein S13	NA