UHGV-0149074

Genome information

Genome length 19,450 bps

CDS count 24

Completeness 50.95% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149074
vOTU ID	vOTU-023294
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414502
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.33
Jumbo phage	No

Genome content
Genome length	19,450 bps
GC content	46.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	94.85%
Average CDS length	769.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149074_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149074_1	PHROG	phrog_3088	amidase	lysis
UHGV-0149074_1	UniRef90	UniRef90_A0A6N9QEL6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149074_1	eggNOG-mapper	457396.CSBG_00241	Ami_2	NA
UHGV-0149074_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0149074_1	Pfam	PF13946	NA	DUF4214
UHGV-0149074_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149074_2	PHROG	phrog_1129	holin	lysis
UHGV-0149074_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0149074_2	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0149074_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0149074_2	Structural annotation	PF16079	NA	NA
UHGV-0149074_3	PHROG	phrog_4105	NA	unknown function
UHGV-0149074_3	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0149074_4	PHROG	phrog_6616	tail protein	tail
UHGV-0149074_4	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0149074_4	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0149074_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0149074_4	COG	COG4926	Phage-related protein	NA
UHGV-0149074_5	eggNOG-mapper	86416.Clopa_0590	NA	NA
UHGV-0149074_6	PHROG	phrog_2566	NA	unknown function
UHGV-0149074_6	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0149074_7	PHROG	phrog_1194	NA	unknown function
UHGV-0149074_7	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0149074_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0149074_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0149074_8	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0149074_8	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0149074_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0149074_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0149074_9	PHROG	phrog_8355	NA	unknown function
UHGV-0149074_9	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0149074_9	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-0149074_10	PHROG	phrog_8300	NA	unknown function
UHGV-0149074_10	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0149074_10	Structural annotation	PF06896	NA	NA
UHGV-0149074_11	PHROG	phrog_820	major tail protein	tail
UHGV-0149074_11	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0149074_11	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0149074_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0149074_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0149074_12	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0149074_12	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0149074_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0149074_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0149074_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0149074_13	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0149074_14	PHROG	phrog_8710	NA	unknown function
UHGV-0149074_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0149074_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0149074_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0149074_15	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0149074_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0149074_16	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0149074_16	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0149074_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0149074_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0149074_17	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0149074_19	UniRef90	UniRef90_A0A413JZB5	Glutamyl-tRNA amidotransferase	NA
UHGV-0149074_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0149074_20	UniRef90	UniRef90_A0A3E2N8K9	Minor capsid protein	NA
UHGV-0149074_20	eggNOG-mapper	483218.BACPEC_01158	Phage minor capsid protein 2	NA
UHGV-0149074_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0149074_20	COG	COG2369	NA	NA
UHGV-0149074_20	Structural annotation	PF06152	NA	NA
UHGV-0149074_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0149074_21	UniRef90	UniRef90_UPI001F14233C	capsid protein	NA
UHGV-0149074_21	eggNOG-mapper	1282664.H354_06626	NA	NA
UHGV-0149074_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0149074_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0149074_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149074_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0149074_22	UniRef90	UniRef90_A0A413RCQ1	Terminase	NA
UHGV-0149074_22	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0149074_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149074_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149074_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0149074_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0149074_23	UniRef90	UniRef90_UPI001A9B46DD	terminase small subunit	NA
UHGV-0149074_23	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0149074_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0149074_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0149074_23	Structural annotation	PF03592, COG3728	NA	NA