UHGV-0149192

Genome information

Genome length 14,433 bps

CDS count 21

Completeness 65.67% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149192
vOTU ID	vOTU-027363
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_439432
BioSample	SAMN06016365
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	Yes

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.11
Jumbo phage	No

Genome content
Genome length	14,433 bps
GC content	36.24%
Genetic code	Blepharisma nuclear code (15)
CDS count	21
CDS density	90.79%
Average CDS length	627.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149192_3	UniRef90	UniRef90_A0A1B1YJJ5	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0149192_3	eggNOG-mapper	1121335.Clst_0949	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0149192_3	Pfam	PF03232	Ubiquinone biosynthesis protein COQ7	COQ7
UHGV-0149192_3	COG	COG1633	Rubrerythrin, includes spore coat protein YhjR	NA
UHGV-0149192_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0149192_7	UniRef90	UniRef90_A0A843GP34	Phage DNA encapsidation protein	NA
UHGV-0149192_7	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0149192_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0149192_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0149192_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0149192_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0149192_8	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0149192_8	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0149192_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0149192_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0149192_9	Structural annotation	PF05435	NA	NA
UHGV-0149192_10	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149192_10	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0149192_10	Structural annotation	PF17427	NA	NA
UHGV-0149192_11	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149192_11	Structural annotation	PF17548	NA	NA
UHGV-0149192_15	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0149192_15	PHROG	phrog_894	endolysin	lysis
UHGV-0149192_15	UniRef90	UniRef90_UPI001062B92E	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0149192_15	eggNOG-mapper	293826.Amet_0863	Peptidase M15A	NA
UHGV-0149192_15	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0149192_15	COG	COG3108	NA	NA
UHGV-0149192_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0149192_17	UniRef90	UniRef90_A0A843GX77	Ig-like domain-containing protein	NA
UHGV-0149192_17	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0149192_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0149192_17	Structural annotation	PF21703, MF_04119, NF033394, COG4653	NA	NA
UHGV-0149192_18	PHROG	phrog_2248	tail protein	tail
UHGV-0149192_18	UniRef90	UniRef90_A0A1X9SGF9	Tail knob protein	NA
UHGV-0149192_18	eggNOG-mapper	1128071.G9J3H9_9CAUD	Peptidase family M23	NA
UHGV-0149192_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0149192_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0149192_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0149192_19	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0149192_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-0149192_19	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0149192_19	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0149192_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0149192_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0149192_20	UniRef90	UniRef90_A0A7S5RIY2	Lower collar connector protein	NA
UHGV-0149192_20	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0149192_21	PHROG	phrog_19253	NA	unknown function
UHGV-0149192_21	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0149192_21	COG	COG5434	Polygalacturonase	NA