UHGV-0149220

Genome information

Genome length 31,711 bps

CDS count 49

Completeness 57.12% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149220
vOTU ID	vOTU-027365
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_402071
BioSample	SAMN05194714
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.54
Jumbo phage	No

Genome content
Genome length	31,711 bps
GC content	43.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.32%
Average CDS length	594.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149220_1	PHROG	phrog_962	holin	lysis
UHGV-0149220_1	UniRef90	UniRef90_A0A134AEP1	Holin, phage phi LC3 family	NA
UHGV-0149220_1	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0149220_1	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0149220_1	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0149220_1	COG	COG5546	NA	NA
UHGV-0149220_1	Structural annotation	COG5546	NA	NA
UHGV-0149220_2	PHROG	phrog_1863	NA	unknown function
UHGV-0149220_2	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0149220_4	PHROG	phrog_16573	NA	unknown function
UHGV-0149220_4	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0149220_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0149220_5	UniRef90	UniRef90_UPI0004D52A5E	phage tail protein	NA
UHGV-0149220_5	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0149220_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0149220_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0149220_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0149220_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0149220_6	UniRef90	UniRef90_A0A845QU54	Phage tail protein	NA
UHGV-0149220_6	eggNOG-mapper	508419.F8J171_9CAUD	Phage tail protein	NA
UHGV-0149220_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0149220_7	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0149220_7	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0149220_7	UniRef90	UniRef90_UPI001C0B93DE	phage tail tape measure protein	NA
UHGV-0149220_7	eggNOG-mapper	1314.HKU360_01215	Phage-related minor tail protein	NA
UHGV-0149220_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0149220_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0149220_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0149220_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0149220_9	PHROG	phrog_88	major tail protein	tail
UHGV-0149220_9	UniRef90	UniRef90_A0A897H1J0	Phage tail protein	NA
UHGV-0149220_9	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0149220_9	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0149220_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0149220_9	COG	COG5492	NA	NA
UHGV-0149220_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0149220_10	PHROG	phrog_78	tail terminator	connector
UHGV-0149220_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0149220_12	PHROG	phrog_19734	NA	unknown function
UHGV-0149220_12	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0149220_13	PHROG	phrog_749	NA	unknown function
UHGV-0149220_13	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0149220_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149220_14	UniRef90	UniRef90_A0A7X5E289	Phage major capsid protein	NA
UHGV-0149220_14	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0149220_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149220_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149220_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149220_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149220_15	PHROG	phrog_16951	NA	unknown function
UHGV-0149220_15	eggNOG-mapper	428125.CLOLEP_03662	NA	NA
UHGV-0149220_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0149220_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149220_16	UniRef90	UniRef90_UPI00058D3C87	phage portal protein	NA
UHGV-0149220_16	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0149220_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149220_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0149220_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149220_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149220_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149220_17	UniRef90	UniRef90_UPI0006891B60	terminase large subunit	NA
UHGV-0149220_17	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0149220_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149220_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149220_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149220_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0149220_18	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0149220_18	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0149220_18	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0149220_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0149220_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0149220_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149220_19	UniRef90	UniRef90_A0A6B4HS69	HNH endonuclease	NA
UHGV-0149220_19	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0149220_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149220_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149220_21	PHROG	phrog_24518	NA	unknown function
UHGV-0149220_23	PHROG	phrog_3922	major head protein	head and packaging
UHGV-0149220_23	UniRef90	UniRef90_A0A348P350	Phage major capsid protein	NA
UHGV-0149220_23	eggNOG-mapper	411467.BACCAP_00296	NA	NA
UHGV-0149220_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149220_24	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0149220_24	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0149220_24	UniRef90	UniRef90_UPI00051B9C5E	MT-A70 family methyltransferase	NA
UHGV-0149220_24	eggNOG-mapper	1519439.JPJG01000088_gene694	MT-A70	NA
UHGV-0149220_24	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0149220_24	Pfam	PF05063	MT-A70	MT-A70
UHGV-0149220_24	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0149220_24	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0149220_25	PHROG	phrog_3136	NA	unknown function
UHGV-0149220_25	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0149220_25	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0149220_26	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0149220_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0149220_29	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149220_29	UniRef90	UniRef90_A0A7X1IAL0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0149220_29	eggNOG-mapper	1547445.LO80_03365	crossover junction endodeoxyribonuclease activity	NA
UHGV-0149220_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0149220_29	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0149220_30	PHROG	phrog_15609	NA	unknown function
UHGV-0149220_30	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0149220_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0149220_31	PHROG	phrog_8470	NA	unknown function
UHGV-0149220_31	UniRef90	UniRef90_UPI00164B8CC7	PcfJ domain-containing protein	NA
UHGV-0149220_31	eggNOG-mapper	693746.OBV_25400	PcfJ-like protein	NA
UHGV-0149220_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0149220_31	Structural annotation	PF14284	NA	NA
UHGV-0149220_32	PHROG	phrog_38338	NA	unknown function
UHGV-0149220_32	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0149220_32	eggNOG-mapper	1514668.JOOA01000001_gene227	NA	NA
UHGV-0149220_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149220_34	eggNOG-mapper	1514668.JOOA01000001_gene223	NA	NA
UHGV-0149220_35	UniRef90	UniRef90_T0I3T0	NA	NA
UHGV-0149220_39	PHROG	phrog_28990	NA	unknown function
UHGV-0149220_44	UniRef90	UniRef90_A0A3B9SF96	HTH cro/C1-type domain-containing protein	NA
UHGV-0149220_44	eggNOG-mapper	1235796.C815_00951	NA	NA
UHGV-0149220_44	Pfam	PF05339	NA	DUF739
UHGV-0149220_44	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0149220_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0149220_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149220_45	UniRef90	UniRef90_E2ZAX3	DNA-binding helix-turn-helix protein	NA
UHGV-0149220_45	eggNOG-mapper	641112.ACOK01000103_gene520	DNA-binding helix-turn-helix protein	NA
UHGV-0149220_45	PADLOC	Control_protein_00002	control protein	RM
UHGV-0149220_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149220_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0149220_45	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0149220_48	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0149220_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0149220_49	PHROG	phrog_95	integrase	integration and excision
UHGV-0149220_49	UniRef90	UniRef90_A0A542AKA3	DNA invertase Pin-like site-specific DNA recombinase	NA
UHGV-0149220_49	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0149220_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0149220_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-0149220_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0149220_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149220_49	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA