UHGV-0149317

Genome information

Genome length 30,280 bps

CDS count 45

Completeness 83.53% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149317
vOTU ID	vOTU-018145
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394687
BioSample	SAMN04436658
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.96
Jumbo phage	No

Genome content
Genome length	30,280 bps
GC content	51.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.15%
Average CDS length	630.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149317_1	PHROG	phrog_18739	NA	unknown function
UHGV-0149317_1	UniRef90	UniRef90_A0A486RX06	Phage EaA protein	NA
UHGV-0149317_1	eggNOG-mapper	1115653.S5M7T0_9CAUD	Ead/Ea22-like protein	NA
UHGV-0149317_1	PADLOC	DpdH_00016	DpdH	DPD
UHGV-0149317_2	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149317_2	UniRef90	UniRef90_A0A7U4GVK9	HNHc domain-containing protein	NA
UHGV-0149317_2	eggNOG-mapper	1147144.K7P7B7_9CAUD	HNH endonuclease	NA
UHGV-0149317_2	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0149317_3	PHROG	phrog_26798	NA	unknown function
UHGV-0149317_3	UniRef90	UniRef90_UPI000E2B0CFE	NA	NA
UHGV-0149317_3	eggNOG-mapper	1168549.I6R0R2_9CAUD	NA	NA
UHGV-0149317_4	PHROG	phrog_4595	NA	unknown function
UHGV-0149317_4	eggNOG-mapper	220341.16502183	NA	NA
UHGV-0149317_4	Structural annotation	PF20090, NF041544	NA	NA
UHGV-0149317_5	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149317_5	UniRef90	UniRef90_UPI000E07F9D9	recombination protein NinG	NA
UHGV-0149317_5	eggNOG-mapper	35703.DQ02_12500	Bacteriophage Lambda NinG protein	NA
UHGV-0149317_5	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0149317_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149317_5	Structural annotation	PF05766	NA	NA
UHGV-0149317_6	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0149317_6	UniRef90	UniRef90_A0A208MX97	Dcm methylase	NA
UHGV-0149317_6	eggNOG-mapper	1205683.CAKR01000025_gene3612	NA	NA
UHGV-0149317_6	Structural annotation	PF01728, MF_01547, NF008390, COG0293	NA	NA
UHGV-0149317_7	PHROG	phrog_33262	NA	unknown function
UHGV-0149317_7	UniRef90	UniRef90_A0A483JPI8	Phage N-6-adenine-methyltransferase	NA
UHGV-0149317_7	eggNOG-mapper	1080067.BAZH01000027_gene3201	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0149317_7	PADLOC	MTase_II_00118	Type II methyltransferase	RM
UHGV-0149317_7	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0149317_7	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0149317_7	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0149317_7	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0149317_8	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0149317_8	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-0149317_8	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0149317_8	Pfam	PF06576	NA	DUF1133
UHGV-0149317_8	Structural annotation	PF06576	NA	NA
UHGV-0149317_9	PHROG	phrog_16499	NA	unknown function
UHGV-0149317_9	UniRef90	UniRef90_A0A6C7HRG5	Exported phage protein	NA
UHGV-0149317_9	eggNOG-mapper	1288826.MSNKSG1_02379	NA	NA
UHGV-0149317_10	PHROG	phrog_8257	NA	unknown function
UHGV-0149317_10	UniRef90	UniRef90_M7CV74	Phage membrane protein	NA
UHGV-0149317_10	eggNOG-mapper	1288826.MSNKSG1_02384	NA	NA
UHGV-0149317_11	PHROG	phrog_785	holin	lysis
UHGV-0149317_11	UniRef90	UniRef90_A0A331VEA5	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0149317_11	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0149317_11	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0149317_11	Structural annotation	PF16083	NA	NA
UHGV-0149317_12	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0149317_12	PHROG	phrog_12853	NA	unknown function
UHGV-0149317_12	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-0149317_12	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0149317_12	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0149317_12	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0149317_12	COG	COG3926	Lysozyme family protein	NA
UHGV-0149317_12	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0149317_13	PHROG	phrog_1356	holin	lysis
UHGV-0149317_13	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0149317_13	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0149317_14	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0149317_14	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0149317_15	PHROG	phrog_19753	NA	unknown function
UHGV-0149317_16	PHROG	phrog_17957	NA	unknown function
UHGV-0149317_17	PHROG	phrog_31461	NA	unknown function
UHGV-0149317_18	PHROG	phrog_571	NA	unknown function
UHGV-0149317_18	UniRef90	UniRef90_A0A0C7EYH0	NA	NA
UHGV-0149317_18	eggNOG-mapper	1028307.EAE_21105	NA	NA
UHGV-0149317_18	Pfam	PF10834	NA	DUF2560
UHGV-0149317_18	Structural annotation	PF10834	NA	NA
UHGV-0149317_19	UniRef90	UniRef90_A0A482IEQ3	NA	NA
UHGV-0149317_19	Pfam	PF04448	NA	DUF551
UHGV-0149317_19	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0149317_20	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149317_20	UniRef90	UniRef90_A0A1X9TP23	HNH endonuclease	NA
UHGV-0149317_20	eggNOG-mapper	1115515.EV102420_11_00240	HNH nucleases	NA
UHGV-0149317_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149317_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149317_21	PHROG	phrog_24041	NA	unknown function
UHGV-0149317_21	UniRef90	UniRef90_A0A1X9TP60	Serine acetyltransferase	NA
UHGV-0149317_21	eggNOG-mapper	906668.G8C7N9_9CAUD	NA	NA
UHGV-0149317_22	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-0149317_22	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-0149317_22	eggNOG-mapper	1115515.EV102420_11_00220	NA	NA
UHGV-0149317_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149317_23	UniRef90	UniRef90_A0A090V0X1	Putative terminase large subunit	NA
UHGV-0149317_23	eggNOG-mapper	1115515.EV102420_11_00210	Phage Terminase	NA
UHGV-0149317_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149317_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149317_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149317_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149317_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149317_24	UniRef90	UniRef90_A0A090V0Q9	Putative portal protein	NA
UHGV-0149317_24	eggNOG-mapper	1115515.EV102420_11_00200	Phage portal protein	NA
UHGV-0149317_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149317_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0149317_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149317_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149317_25	KOfam	K06904	NA	NA
UHGV-0149317_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0149317_25	UniRef90	UniRef90_A0A482II40	Prohead protease	NA
UHGV-0149317_25	eggNOG-mapper	1115515.EV102420_11_00190	Caudovirus prohead serine protease	NA
UHGV-0149317_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0149317_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0149317_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0149317_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0149317_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149317_26	UniRef90	UniRef90_A0A286S1R4	Major capsid protein	NA
UHGV-0149317_26	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0149317_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149317_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149317_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149317_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149317_27	PHROG	phrog_18204	NA	unknown function
UHGV-0149317_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0149317_28	UniRef90	UniRef90_A0A1X9TNW7	Phage gp6-like head-tail connector protein	NA
UHGV-0149317_28	eggNOG-mapper	1115515.EV102420_11_00160	Phage gp6-like head-tail connector protein	NA
UHGV-0149317_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0149317_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0149317_29	PHROG	phrog_2612	NA	unknown function
UHGV-0149317_29	UniRef90	UniRef90_A0A8F4G2J7	HU family DNA-binding protein	NA
UHGV-0149317_29	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0149317_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0149317_30	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0149317_30	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0149317_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0149317_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0149317_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149317_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149317_31	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0149317_31	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0149317_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0149317_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0149317_31	Structural annotation	TIGR01725	NA	NA
UHGV-0149317_32	PHROG	phrog_78	tail terminator	connector
UHGV-0149317_32	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0149317_32	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0149317_32	Pfam	PF11367	NA	DUF3168
UHGV-0149317_32	Structural annotation	PF11367	NA	NA
UHGV-0149317_33	PHROG	phrog_158	major tail protein	tail
UHGV-0149317_33	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0149317_33	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0149317_33	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0149317_33	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0149317_34	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0149317_34	UniRef90	UniRef90_A0A8F6VAG0	Phage tail assembly chaperone family protein, TAC	NA
UHGV-0149317_34	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0149317_34	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0149317_34	Structural annotation	PF16459	NA	NA
UHGV-0149317_36	PHROG	phrog_29243	NA	unknown function
UHGV-0149317_36	UniRef90	UniRef90_UPI00115D10D2	lipoprotein	NA
UHGV-0149317_36	eggNOG-mapper	1115512.EH105704_01_02160	NA	NA
UHGV-0149317_37	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0149317_37	UniRef90	UniRef90_UPI0008D9366A	phage tail tape measure protein	NA
UHGV-0149317_37	eggNOG-mapper	640513.Entas_3068	lytic transglycosylase activity	NA
UHGV-0149317_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0149317_38	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0149317_38	UniRef90	UniRef90_A0A6S4Y1R4	Membrane protein	NA
UHGV-0149317_38	eggNOG-mapper	1028307.EAE_21020	NA	NA
UHGV-0149317_38	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0149317_39	PHROG	phrog_396	minor tail protein	tail
UHGV-0149317_39	UniRef90	UniRef90_A0A377TLB9	ArsR family transcriptional regulator	NA
UHGV-0149317_39	eggNOG-mapper	371042.NG99_23805	NA	NA
UHGV-0149317_39	Pfam	PF08875	NA	DUF1833
UHGV-0149317_39	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0149317_40	PHROG	phrog_329	minor tail protein	tail
UHGV-0149317_40	UniRef90	UniRef90_W1I0M2	COG2116: Formate/nitrite family of transporters	NA
UHGV-0149317_40	eggNOG-mapper	158822.LH89_20575	NA	NA
UHGV-0149317_40	Structural annotation	TIGR02219	NA	NA
UHGV-0149317_41	PHROG	phrog_469	tail protein	tail
UHGV-0149317_41	UniRef90	UniRef90_A0A0J2JFJ4	Kinase	NA
UHGV-0149317_41	eggNOG-mapper	573.JG24_11060	cellulase activity	NA
UHGV-0149317_41	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0149317_41	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0149317_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0149317_41	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA
UHGV-0149317_42	PHROG	phrog_32929	NA	unknown function
UHGV-0149317_42	UniRef90	UniRef90_UPI00058F82B1	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0149317_42	eggNOG-mapper	371042.NG99_23230	biosynthesis protein	NA
UHGV-0149317_42	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0149317_42	COG	COG5434	Polygalacturonase	NA
UHGV-0149317_44	PHROG	phrog_7836	NA	unknown function
UHGV-0149317_45	PHROG	phrog_22560	tail protein	tail
UHGV-0149317_45	UniRef90	UniRef90_UPI0019D4B4C4	phage tail fiber protein	NA