UHGV-0149388

Genome information

Genome length 41,466 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149388
vOTU ID	vOTU-046121
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_436795
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.21
Jumbo phage	No

Genome content
Genome length	41,466 bps
GC content	62.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.63%
Average CDS length	546.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149388_1	eggNOG-mapper	411467.BACCAP_00698	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0149388_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0149388_2	UniRef90	UniRef90_A0A1C6B723	Germination-specific amidase	NA
UHGV-0149388_2	eggNOG-mapper	552398.HMPREF0866_00708	Cell Wall Hydrolase	NA
UHGV-0149388_2	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0149388_2	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0149388_4	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0149388_5	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0149388_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149388_7	UniRef90	UniRef90_A0A1H0W5S2	Helix-turn-helix domain-containing protein	NA
UHGV-0149388_7	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149388_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149388_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0149388_7	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0149388_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149388_9	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0149388_9	eggNOG-mapper	768710.DesyoDRAFT_5236	DnaD domain protein	NA
UHGV-0149388_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0149388_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0149388_9	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0149388_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0149388_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0149388_10	UniRef90	UniRef90_UPI001875E60F	replicative DNA helicase	NA
UHGV-0149388_10	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0149388_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0149388_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0149388_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0149388_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0149388_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0149388_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0149388_11	UniRef90	UniRef90_UPI001F3C1DB2	ParA family protein	NA
UHGV-0149388_11	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0149388_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0149388_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0149388_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0149388_12	PHROG	phrog_15609	NA	unknown function
UHGV-0149388_12	UniRef90	UniRef90_UPI001958A9B5	NA	NA
UHGV-0149388_12	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0149388_12	Pfam	PF11300	NA	DUF3102
UHGV-0149388_12	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0149388_12	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0149388_13	PHROG	phrog_38338	NA	unknown function
UHGV-0149388_13	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0149388_14	PHROG	phrog_8470	NA	unknown function
UHGV-0149388_14	UniRef90	UniRef90_UPI0018A02262	PcfJ domain-containing protein	NA
UHGV-0149388_14	eggNOG-mapper	693746.OBV_24010	PcfJ-like protein	NA
UHGV-0149388_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0149388_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149388_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149388_15	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-0149388_15	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0149388_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149388_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149388_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149388_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149388_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149388_17	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0149388_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149388_17	UniRef90	UniRef90_A0A0Q9TXC4	HTH cro/C1-type domain-containing protein	NA
UHGV-0149388_17	eggNOG-mapper	1101188.KI912156_gene4173	Cupin domain	NA
UHGV-0149388_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149388_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149388_18	PHROG	phrog_31029	NA	unknown function
UHGV-0149388_20	PHROG	phrog_22543	NA	unknown function
UHGV-0149388_21	PHROG	phrog_774	NA	unknown function
UHGV-0149388_21	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0149388_25	PHROG	phrog_38832	NA	unknown function
UHGV-0149388_25	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0149388_30	Structural annotation	PF19070	NA	NA
UHGV-0149388_32	Structural annotation	NF041677	NA	NA
UHGV-0149388_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149388_33	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0149388_33	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0149388_34	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0149388_34	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0149388_34	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0149388_34	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0149388_35	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149388_35	UniRef90	UniRef90_UPI001031C755	HNH endonuclease	NA
UHGV-0149388_35	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0149388_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149388_35	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0149388_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0149388_36	UniRef90	UniRef90_UPI001F1C7CBA	phage terminase small subunit P27 family	NA
UHGV-0149388_36	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0149388_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0149388_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0149388_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0149388_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0149388_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149388_37	UniRef90	UniRef90_A0A1Y4RNG4	Terminase	NA
UHGV-0149388_37	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0149388_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149388_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149388_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149388_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149388_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149388_39	UniRef90	UniRef90_A0A1Y4RNE3	Phage portal protein	NA
UHGV-0149388_39	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0149388_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149388_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0149388_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149388_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149388_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0149388_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0149388_40	UniRef90	UniRef90_A0A8J6M5P1	Clp protease ClpP	NA
UHGV-0149388_40	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-0149388_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0149388_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0149388_40	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0149388_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149388_41	UniRef90	UniRef90_A0A7X3DGW7	Phage major capsid protein	NA
UHGV-0149388_41	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0149388_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149388_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149388_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149388_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149388_42	eggNOG-mapper	742738.HMPREF9460_00877	NA	NA
UHGV-0149388_42	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0149388_43	UniRef90	UniRef90_UPI0010309381	head-tail connector protein	NA
UHGV-0149388_43	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0149388_43	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0149388_44	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0149388_44	UniRef90	UniRef90_A0A7X3AR57	NA	NA
UHGV-0149388_44	eggNOG-mapper	665956.HMPREF1032_00099	NA	NA
UHGV-0149388_44	Pfam	PF10387	NA	DUF2442
UHGV-0149388_44	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0149388_45	PHROG	phrog_14333	NA	unknown function
UHGV-0149388_45	UniRef90	UniRef90_A0A7X3AR62	NA	NA
UHGV-0149388_45	eggNOG-mapper	1045858.Bint_0544	NA	NA
UHGV-0149388_45	Pfam	PF13711	NA	DUF4160
UHGV-0149388_45	Structural annotation	PF13711	NA	NA
UHGV-0149388_46	PHROG	phrog_29848	NA	unknown function
UHGV-0149388_46	UniRef90	UniRef90_UPI0018989B1A	head-tail adaptor protein	NA
UHGV-0149388_46	eggNOG-mapper	742738.HMPREF9460_01370	NA	NA
UHGV-0149388_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149388_47	PHROG	phrog_38627	NA	unknown function
UHGV-0149388_47	eggNOG-mapper	1007096.BAGW01000012_gene2382	NA	NA
UHGV-0149388_48	PHROG	phrog_525	NA	unknown function
UHGV-0149388_48	eggNOG-mapper	742738.HMPREF9460_01372	NA	NA
UHGV-0149388_48	Pfam	PF20765	NA	DUF6838
UHGV-0149388_48	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0149388_49	PHROG	phrog_1480	tail sheath	tail
UHGV-0149388_49	UniRef90	UniRef90_UPI00195F14C9	phage tail sheath protein	NA
UHGV-0149388_49	eggNOG-mapper	742738.HMPREF9460_00884	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0149388_49	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0149388_49	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0149388_50	PHROG	phrog_365	tail protein	tail
UHGV-0149388_50	UniRef90	UniRef90_A0A1Y3ZJV9	Phage portal protein	NA
UHGV-0149388_50	eggNOG-mapper	742738.HMPREF9460_01375	Phage tail tube protein	NA
UHGV-0149388_50	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0149388_50	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0149388_51	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0149388_51	UniRef90	UniRef90_G9YLM1	Phage XkdN-like protein	NA
UHGV-0149388_51	eggNOG-mapper	742738.HMPREF9460_01376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0149388_51	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0149388_51	Structural annotation	PF08890	NA	NA
UHGV-0149388_53	PHROG	phrog_33570	NA	unknown function
UHGV-0149388_53	UniRef90	UniRef90_UPI001BB47BDD	tape measure protein	NA
UHGV-0149388_53	eggNOG-mapper	742738.HMPREF9460_01378	tape measure	NA
UHGV-0149388_53	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0149388_53	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0149388_53	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0149388_54	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149388_54	PHROG	phrog_380	endolysin	lysis
UHGV-0149388_54	UniRef90	UniRef90_UPI00102FAEC9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0149388_54	eggNOG-mapper	1297617.JPJD01000034_gene677	LysM domain	NA
UHGV-0149388_54	Pfam	PF01476	LysM domain	LysM
UHGV-0149388_54	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0149388_54	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0149388_55	PHROG	phrog_400	tail protein	tail
UHGV-0149388_55	eggNOG-mapper	742738.HMPREF9460_01380	NLP P60 protein	NA
UHGV-0149388_55	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0149388_55	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0149388_56	UniRef90	UniRef90_UPI001BB47902	NA	NA
UHGV-0149388_56	Pfam	PF10844	NA	DUF2577
UHGV-0149388_56	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0149388_57	PHROG	phrog_120	baseplate protein	tail
UHGV-0149388_57	UniRef90	UniRef90_UPI001BB475C8	NA	NA
UHGV-0149388_57	eggNOG-mapper	742738.HMPREF9460_04275	NA	NA
UHGV-0149388_57	Pfam	PF10934	NA	DUF2634
UHGV-0149388_57	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0149388_57	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0149388_58	PHROG	phrog_6	baseplate protein	tail
UHGV-0149388_58	UniRef90	UniRef90_UPI0019587CF5	baseplate J/gp47 family protein	NA
UHGV-0149388_58	eggNOG-mapper	742738.HMPREF9460_04274	Baseplate J-like protein	NA
UHGV-0149388_58	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0149388_58	COG	COG3299	NA	NA
UHGV-0149388_58	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0149388_59	PHROG	phrog_521	tail protein	tail
UHGV-0149388_59	UniRef90	UniRef90_UPI001BB483C3	NA	NA
UHGV-0149388_59	eggNOG-mapper	1297617.JPJD01000034_gene672	NA	NA
UHGV-0149388_59	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0149388_59	COG	COG3778	NA	NA
UHGV-0149388_59	Structural annotation	PF10076, TIGR02242, COG4385	NA	NA
UHGV-0149388_60	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0149388_60	UniRef90	UniRef90_A0A0X1U7T9	Phage tail fiber repeat protein	NA
UHGV-0149388_60	eggNOG-mapper	1157490.EL26_01690	tail collar domain protein	NA
UHGV-0149388_60	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0149388_61	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0149388_61	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0149388_61	COG	COG4675	Phage tail collar domain	NA
UHGV-0149388_62	PHROG	phrog_38707	NA	unknown function
UHGV-0149388_62	UniRef90	UniRef90_A0A2N2VYR6	Mtd_N domain-containing protein	NA
UHGV-0149388_62	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0149388_62	COG	COG4675	Phage tail collar domain	NA
UHGV-0149388_63	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-0149388_63	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0149388_64	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0149388_64	UniRef90	UniRef90_UPI001BB47D64	fibronectin type III domain-containing protein	NA
UHGV-0149388_64	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0149388_66	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-0149388_66	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0149388_67	PHROG	phrog_37604	NA	unknown function
UHGV-0149388_67	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0149388_68	PHROG	phrog_1129	holin	lysis
UHGV-0149388_68	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0149388_68	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0149388_68	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0149388_68	Structural annotation	PF06946	NA	NA
UHGV-0149388_70	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149388_70	PHROG	phrog_435	endolysin	lysis
UHGV-0149388_70	UniRef90	UniRef90_A0A1G8HCT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149388_70	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0149388_70	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0149388_70	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0149388_70	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA