UHGV-0149547

Genome information

Genome length 24,075 bps

CDS count 40

Completeness 64.01% (medium-quality)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149547
vOTU ID	vOTU-027386
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_420459
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length	24,075 bps
GC content	49.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	87.67%
Average CDS length	531.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149547_1	KOfam	K18881	DJ1D; D-lactate dehydratase [EC:4.2.1.130]	NA
UHGV-0149547_1	UniRef90	UniRef90_UPI001582A153	DJ-1/PfpI family protein	NA
UHGV-0149547_1	eggNOG-mapper	573.JG24_09950	Intracellular protease	NA
UHGV-0149547_1	COG	COG0693	Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids)	NA
UHGV-0149547_2	KOfam	K14059	int; integrase	NA
UHGV-0149547_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0149547_2	UniRef90	UniRef90_A0A482IEN3	Integrase	NA
UHGV-0149547_2	eggNOG-mapper	399742.Ent638_2626	Belongs to the 'phage' integrase family	NA
UHGV-0149547_2	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0149547_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149547_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149547_2	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0149547_3	UniRef90	UniRef90_A0A2L0KFG4	AlpA family transcriptional regulator	NA
UHGV-0149547_3	eggNOG-mapper	1147157.K7PKW1_9CAUD	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-0149547_3	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0149547_5	PHROG	phrog_1515	NA	unknown function
UHGV-0149547_5	UniRef90	UniRef90_A0A286S1S7	2-polyprenylphenol hydrolase	NA
UHGV-0149547_5	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0149547_5	Structural annotation	PF17345	NA	NA
UHGV-0149547_6	PHROG	phrog_1886	NA	unknown function
UHGV-0149547_6	eggNOG-mapper	1197719.A464_2044	NA	NA
UHGV-0149547_7	PHROG	phrog_1525	NA	unknown function
UHGV-0149547_7	eggNOG-mapper	371042.NG99_17025	NA	NA
UHGV-0149547_8	PHROG	phrog_340	NA	unknown function
UHGV-0149547_8	eggNOG-mapper	1005994.GTGU_01796	NA	NA
UHGV-0149547_9	PHROG	phrog_1737	NA	unknown function
UHGV-0149547_9	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0149547_9	Structural annotation	PF17345	NA	NA
UHGV-0149547_10	PHROG	phrog_8959	NA	unknown function
UHGV-0149547_10	Structural annotation	TIGR01280	NA	NA
UHGV-0149547_12	PHROG	phrog_27579	NA	unknown function
UHGV-0149547_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0149547_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0149547_13	UniRef90	UniRef90_A0A2N4Z747	HTH cro/C1-type domain-containing protein	NA
UHGV-0149547_13	eggNOG-mapper	1082705.JIBP01000007_gene1328	repressor	NA
UHGV-0149547_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149547_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0149547_13	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0149547_13	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0149547_14	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0149547_14	UniRef90	UniRef90_A0A8B2RFA7	Transcriptional regulator	NA
UHGV-0149547_14	eggNOG-mapper	1247024.JRLH01000004_gene2221	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0149547_14	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0149547_14	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0149547_14	Structural annotation	PF15943, TIGR02607, COG4197	NA	NA
UHGV-0149547_17	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149547_17	UniRef90	UniRef90_A0A2A5MIV7	Helix-turn-helix domain-containing protein	NA
UHGV-0149547_17	eggNOG-mapper	1080067.BAZH01000010_gene590	Helix-turn-helix domain	NA
UHGV-0149547_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0149547_17	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0149547_17	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0149547_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0149547_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0149547_18	UniRef90	UniRef90_A0A330RXU1	ATP binding protein, IstB family	NA
UHGV-0149547_18	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0149547_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0149547_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0149547_18	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0149547_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0149547_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0149547_19	UniRef90	UniRef90_A0A377ZT04	DNA helicase	NA
UHGV-0149547_19	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0149547_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0149547_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0149547_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0149547_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0149547_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149547_20	UniRef90	UniRef90_A0A8B3QL51	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0149547_20	eggNOG-mapper	911008.GLAD_04115	endodeoxyribonuclease RusA	NA
UHGV-0149547_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0149547_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0149547_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0149547_21	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0149547_21	UniRef90	UniRef90_A0A658AWG2	Antitermination protein	NA
UHGV-0149547_21	eggNOG-mapper	90371.CY43_09765	Phage antitermination protein Q	NA
UHGV-0149547_21	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0149547_21	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0149547_22	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-0149547_22	PHROG	phrog_32462	NA	unknown function
UHGV-0149547_22	UniRef90	UniRef90_A0A855FG31	RelA_SpoT domain-containing protein	NA
UHGV-0149547_22	eggNOG-mapper	1196835.A458_18515	Region found in RelA / SpoT proteins	NA
UHGV-0149547_22	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-0149547_22	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-0149547_22	Structural annotation	PF04607, TIGR04562, COG2357	NA	NA
UHGV-0149547_23	PHROG	phrog_1974	NA	unknown function
UHGV-0149547_23	UniRef90	UniRef90_UPI0018A31249	nucleoid-associated protein	NA
UHGV-0149547_23	eggNOG-mapper	1196835.A458_18510	37-kD nucleoid-associated bacterial protein	NA
UHGV-0149547_23	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0149547_23	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0149547_24	PHROG	phrog_785	holin	lysis
UHGV-0149547_24	UniRef90	UniRef90_A0A330YPJ8	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0149547_24	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0149547_24	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0149547_24	Structural annotation	PF16083	NA	NA
UHGV-0149547_25	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0149547_25	PHROG	phrog_12853	NA	unknown function
UHGV-0149547_25	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-0149547_25	eggNOG-mapper	393305.YE1815	secretion activating protein	NA
UHGV-0149547_25	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0149547_25	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0149547_25	COG	COG3926	Lysozyme family protein	NA
UHGV-0149547_25	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0149547_26	PHROG	phrog_1356	holin	lysis
UHGV-0149547_26	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0149547_26	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0149547_27	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0149547_27	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0149547_28	eggNOG-mapper	1349785.BAUG01000003_gene284	NA	NA
UHGV-0149547_29	PHROG	phrog_1453	NA	unknown function
UHGV-0149547_29	UniRef90	UniRef90_A0A2G0PU97	UpfA	NA
UHGV-0149547_29	eggNOG-mapper	573.JG24_10955	NA	NA
UHGV-0149547_30	UniRef90	UniRef90_UPI001143D543	NA	NA
UHGV-0149547_31	PHROG	phrog_571	NA	unknown function
UHGV-0149547_31	UniRef90	UniRef90_UPI0007CBDB7D	NA	NA
UHGV-0149547_31	eggNOG-mapper	573.JG24_10960	NA	NA
UHGV-0149547_31	Pfam	PF10834	NA	DUF2560
UHGV-0149547_31	Structural annotation	PF10834	NA	NA
UHGV-0149547_32	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149547_32	UniRef90	UniRef90_A0A2X4YRT2	HNH endonuclease	NA
UHGV-0149547_32	eggNOG-mapper	573.JG24_10965	HNH nucleases	NA
UHGV-0149547_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149547_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0149547_33	UniRef90	UniRef90_A0A377ZY98	Phage terminase small subunit	NA
UHGV-0149547_33	eggNOG-mapper	35703.DQ02_24235	phage terminase small subunit	NA
UHGV-0149547_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0149547_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0149547_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0149547_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0149547_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149547_34	UniRef90	UniRef90_A0A377ZYG0	Phage terminase large subunit	NA
UHGV-0149547_34	eggNOG-mapper	35703.DQ02_24240	terminase	NA
UHGV-0149547_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149547_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149547_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149547_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149547_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149547_35	UniRef90	UniRef90_UPI001F0F417F	phage portal protein	NA
UHGV-0149547_35	eggNOG-mapper	35703.DQ02_24245	portal protein	NA
UHGV-0149547_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149547_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0149547_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149547_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149547_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0149547_36	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0149547_36	UniRef90	UniRef90_A0A377TU02	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0149547_36	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-0149547_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0149547_36	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0149547_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149547_37	UniRef90	UniRef90_A0A482J371	Major capsid protein	NA
UHGV-0149547_37	eggNOG-mapper	1147150.K7PM57_9CAUD	peptidase activity	NA
UHGV-0149547_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149547_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149547_37	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0149547_38	PHROG	phrog_5463	NA	unknown function
UHGV-0149547_38	eggNOG-mapper	1111728.ATYS01000061_gene462	NA	NA
UHGV-0149547_38	Structural annotation	PF01281	NA	NA
UHGV-0149547_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0149547_39	UniRef90	UniRef90_A0A447RK36	Phage gp6-like head-tail connector protein	NA
UHGV-0149547_39	eggNOG-mapper	35703.DQ02_21680	Phage gp6-like head-tail connector protein	NA
UHGV-0149547_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0149547_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0149547_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0149547_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0149547_40	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-0149547_40	eggNOG-mapper	399742.Ent638_2233	head-tail adaptor	NA
UHGV-0149547_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0149547_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0149547_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0149547_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA