UHGV-0149552

Genome information

Genome length 37,779 bps

CDS count 58

Completeness 96.26% (high-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149552
vOTU ID	vOTU-013156
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_420442
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.9
Jumbo phage	No

Genome content
Genome length	37,779 bps
GC content	40.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.36%
Average CDS length	600.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149552_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149552_2	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0149552_2	eggNOG-mapper	999413.HMPREF1094_02014	HNH nucleases	NA
UHGV-0149552_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149552_2	Structural annotation	TIGR02646	NA	NA
UHGV-0149552_3	UniRef90	UniRef90_A0A6N2XDS2	Sigma-70, region 4	NA
UHGV-0149552_3	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0149552_3	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0149552_7	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0149552_8	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0149552_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0149552_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0149552_9	UniRef90	UniRef90_A0A6N2XFP5	Tyrosine recombinase XerD	NA
UHGV-0149552_9	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0149552_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0149552_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149552_9	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0149552_9	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0149552_10	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0149552_10	UniRef90	UniRef90_A0A412AWF1	Restriction alleviation protein, Lar family	NA
UHGV-0149552_10	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0149552_10	Structural annotation	PF14354, NF007260, COG4888	NA	NA
UHGV-0149552_11	Structural annotation	PF04319, TIGR00686	NA	NA
UHGV-0149552_15	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149552_15	UniRef90	UniRef90_H1BE95	NA	NA
UHGV-0149552_15	eggNOG-mapper	908340.HMPREF9406_2594	NA	NA
UHGV-0149552_15	Pfam	PF12961	NA	DUF3850
UHGV-0149552_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0149552_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0149552_16	UniRef90	UniRef90_N9V9T3	Helicase ATP-binding domain-containing protein	NA
UHGV-0149552_16	eggNOG-mapper	908340.HMPREF9406_2595	SNF2 family N-terminal domain	NA
UHGV-0149552_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0149552_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0149552_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0149552_16	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0149552_17	KOfam	K24451	zim; modification methylase	NA
UHGV-0149552_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0149552_17	UniRef90	UniRef90_A0A6N2XFY6	Methyltransferase	NA
UHGV-0149552_17	eggNOG-mapper	908340.HMPREF9406_2596	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0149552_17	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0149552_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0149552_17	COG	COG0863	DNA modification methylase	NA
UHGV-0149552_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149552_19	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0149552_19	eggNOG-mapper	908340.HMPREF9406_2599	NA	NA
UHGV-0149552_19	Structural annotation	PF21578	NA	NA
UHGV-0149552_21	PHROG	phrog_22529	NA	unknown function
UHGV-0149552_21	UniRef90	UniRef90_A0A6N2XEX9	3D domain protein	NA
UHGV-0149552_21	eggNOG-mapper	796942.HMPREF9623_00735	3D domain protein	NA
UHGV-0149552_21	Pfam	PF06725	3D domain	3D
UHGV-0149552_21	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0149552_21	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0149552_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0149552_28	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0149552_28	UniRef90	UniRef90_UPI0012B3F5BE	helix-turn-helix domain-containing protein	NA
UHGV-0149552_28	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149552_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149552_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149552_28	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0149552_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0149552_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0149552_29	UniRef90	UniRef90_UPI0012B3BE8E	helix-turn-helix domain-containing protein	NA
UHGV-0149552_29	eggNOG-mapper	908340.HMPREF9406_2608	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149552_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149552_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149552_29	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0149552_32	KOfam	K14059	int; integrase	NA
UHGV-0149552_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0149552_32	UniRef90	UniRef90_UPI001EDF2E8E	tyrosine-type recombinase/integrase	NA
UHGV-0149552_32	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0149552_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149552_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149552_33	AcrCatalog	cluster_11486	NA	NA
UHGV-0149552_35	PHROG	phrog_25567	NA	unknown function
UHGV-0149552_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149552_36	KOfam	K19117	csd1, cas8c; CRISPR-associated protein Csd1	NA
UHGV-0149552_36	eggNOG-mapper	999413.HMPREF1094_00546	CRISPR-associated protein (Cas_Csd1)	NA
UHGV-0149552_36	PADLOC	pfam09709	CAS-I-C; effector_LS	CRISPR-CAS
UHGV-0149552_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0149552_37	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0149552_37	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0149552_37	UniRef90	UniRef90_D0GMY5	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0149552_37	eggNOG-mapper	908340.HMPREF9406_2560	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0149552_37	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0149552_37	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0149552_37	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0149552_38	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0149552_38	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0149552_38	UniRef90	UniRef90_G1VMP2	HicB-like domain-containing protein	NA
UHGV-0149552_38	eggNOG-mapper	908340.HMPREF9406_2561	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0149552_38	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0149552_38	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0149552_38	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0149552_39	UniRef90	UniRef90_A0A318KDR1	NlpC/P60 family protein	NA
UHGV-0149552_39	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0149552_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0149552_40	PHROG	phrog_199	holin	lysis
UHGV-0149552_40	UniRef90	UniRef90_N9WWD9	Toxin secretion/phage lysis holin	NA
UHGV-0149552_40	eggNOG-mapper	908340.HMPREF9406_2563	Bacteriophage holin family	NA
UHGV-0149552_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0149552_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0149552_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0149552_41	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0149552_41	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0149552_42	PHROG	phrog_24451	NA	unknown function
UHGV-0149552_42	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0149552_43	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0149552_43	UniRef90	UniRef90_A0A0M2NIZ4	Microcystin dependent protein	NA
UHGV-0149552_43	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0149552_43	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0149552_44	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0149552_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0149552_45	UniRef90	UniRef90_G1VMN5	Prophage_tail domain-containing protein	NA
UHGV-0149552_45	eggNOG-mapper	908340.HMPREF9406_2568	Phage minor structural protein	NA
UHGV-0149552_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0149552_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0149552_45	COG	COG4926	Phage-related protein	NA
UHGV-0149552_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0149552_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0149552_46	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0149552_46	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0149552_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0149552_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0149552_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0149552_47	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0149552_47	PHROG	phrog_5218	NA	unknown function
UHGV-0149552_47	UniRef90	UniRef90_N9V933	PhageMin_Tail domain-containing protein	NA
UHGV-0149552_47	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0149552_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0149552_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0149552_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0149552_49	PHROG	phrog_88	major tail protein	tail
UHGV-0149552_49	UniRef90	UniRef90_N9WHZ7	Phi13 family phage major tail protein	NA
UHGV-0149552_49	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0149552_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0149552_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0149552_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149552_50	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0149552_50	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0149552_50	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0149552_50	Structural annotation	TIGR01725	NA	NA
UHGV-0149552_51	PHROG	phrog_78	tail terminator	connector
UHGV-0149552_51	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0149552_51	Structural annotation	PF05657	NA	NA
UHGV-0149552_52	PHROG	phrog_19734	NA	unknown function
UHGV-0149552_52	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0149552_52	eggNOG-mapper	908340.HMPREF9406_2575	NA	NA
UHGV-0149552_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149552_53	PHROG	phrog_2550	NA	unknown function
UHGV-0149552_53	eggNOG-mapper	908340.HMPREF9406_2576	NA	NA
UHGV-0149552_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149552_54	UniRef90	UniRef90_N9WI02	HK97 family phage major capsid protein	NA
UHGV-0149552_54	eggNOG-mapper	908340.HMPREF9406_2577	phage major capsid protein, HK97 family	NA
UHGV-0149552_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149552_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149552_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149552_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149552_55	KOfam	K06904	NA	NA
UHGV-0149552_55	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0149552_55	UniRef90	UniRef90_G1VMM5	Caudovirus prohead protease	NA
UHGV-0149552_55	eggNOG-mapper	908340.HMPREF9406_2578	Phage prohead protease, HK97 family	NA
UHGV-0149552_55	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0149552_55	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0149552_55	COG	COG3740	Phage head maturation protease	NA
UHGV-0149552_55	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0149552_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149552_56	UniRef90	UniRef90_A0A099I918	Phage portal protein	NA
UHGV-0149552_56	eggNOG-mapper	999413.HMPREF1094_02010	Phage portal protein, HK97 family	NA
UHGV-0149552_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149552_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0149552_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149552_56	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0149552_57	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149552_57	UniRef90	UniRef90_G1VMM3	Phage terminase, large subunit	NA
UHGV-0149552_57	eggNOG-mapper	908340.HMPREF9406_2580	Phage Terminase	NA
UHGV-0149552_57	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149552_57	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149552_57	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149552_57	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0149552_58	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0149552_58	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0149552_58	eggNOG-mapper	908340.HMPREF9406_2581	Phage terminase, small subunit	NA
UHGV-0149552_58	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0149552_58	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA