UHGV-0149563

Genome information

Genome length 41,227 bps

CDS count 78

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149563
vOTU ID	vOTU-046125
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_410782
BioSample	SAMN05414913
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.81
Jumbo phage	No

Genome content
Genome length	41,227 bps
GC content	51.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	86.92%
Average CDS length	463.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149563_1	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0149563_2	PHROG	phrog_372	tail protein	tail
UHGV-0149563_2	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0149563_2	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0149563_2	Pfam	PF05895	NA	DUF859
UHGV-0149563_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0149563_2	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0149563_3	PHROG	phrog_6616	tail protein	tail
UHGV-0149563_3	UniRef90	UniRef90_R6J0A2	Peptidase S74 domain-containing protein	NA
UHGV-0149563_3	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0149563_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0149563_4	PHROG	phrog_1194	NA	unknown function
UHGV-0149563_4	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0149563_4	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0149563_4	Pfam	PF20458	NA	DUF6711
UHGV-0149563_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0149563_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0149563_5	UniRef90	UniRef90_A0A3D9GHV1	Phage-related protein	NA
UHGV-0149563_5	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0149563_5	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0149563_5	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0149563_6	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0149563_7	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0149563_7	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0149563_7	Pfam	PF16478	NA	DUF5055
UHGV-0149563_7	Structural annotation	PF16478	NA	NA
UHGV-0149563_8	PHROG	phrog_158	major tail protein	tail
UHGV-0149563_8	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0149563_8	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0149563_8	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0149563_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0149563_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0149563_10	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0149563_11	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0149563_12	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0149563_12	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0149563_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0149563_12	Structural annotation	TIGR01560	NA	NA
UHGV-0149563_13	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0149563_13	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0149563_13	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0149563_13	Pfam	PF17236	NA	DUF5309
UHGV-0149563_13	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0149563_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0149563_15	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0149563_15	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0149563_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0149563_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0149563_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0149563_16	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0149563_16	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0149563_16	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0149563_16	COG	COG5410	NA	NA
UHGV-0149563_16	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0149563_18	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149563_19	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0149563_19	PHROG	phrog_95	integrase	integration and excision
UHGV-0149563_19	UniRef90	UniRef90_E6UJR7	Resolvase domain	NA
UHGV-0149563_19	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0149563_19	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0149563_19	Pfam	PF07508	Recombinase	Recombinase
UHGV-0149563_19	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149563_19	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0149563_23	PHROG	phrog_6244	NA	unknown function
UHGV-0149563_23	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0149563_25	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0149563_25	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0149563_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0149563_25	Structural annotation	PF16677	NA	NA
UHGV-0149563_27	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0149563_27	Structural annotation	TIGR01636	NA	NA
UHGV-0149563_32	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0149563_34	PHROG	phrog_3136	NA	unknown function
UHGV-0149563_34	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0149563_34	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0149563_34	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0149563_34	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0149563_36	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0149563_37	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0149563_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0149563_37	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0149563_37	Structural annotation	TIGR03655	NA	NA
UHGV-0149563_38	PHROG	phrog_2131	NA	unknown function
UHGV-0149563_38	UniRef90	UniRef90_O34053	ORF22	NA
UHGV-0149563_38	eggNOG-mapper	73422.L0P2P5_9CAUD	NA	NA
UHGV-0149563_39	PHROG	phrog_3136	NA	unknown function
UHGV-0149563_39	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0149563_39	Pfam	PF04266	ASCH domain	ASCH
UHGV-0149563_39	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0149563_39	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0149563_41	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0149563_42	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0149563_44	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0149563_44	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-0149563_44	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0149563_44	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0149563_44	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0149563_44	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0149563_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0149563_47	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149563_47	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0149563_47	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0149563_47	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0149563_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0149563_47	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0149563_48	PHROG	phrog_15768	NA	unknown function
UHGV-0149563_48	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-0149563_48	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0149563_48	AcrCatalog	cluster_38323	NA	NA
UHGV-0149563_48	Pfam	PF19808	NA	DUF6291
UHGV-0149563_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0149563_48	Structural annotation	PF19808	NA	NA
UHGV-0149563_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149563_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149563_49	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0149563_49	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0149563_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149563_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149563_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149563_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149563_49	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149563_50	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0149563_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0149563_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0149563_51	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0149563_51	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0149563_52	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149563_52	UniRef90	UniRef90_S5NS99	HNHc domain-containing protein	NA
UHGV-0149563_52	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0149563_52	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0149563_52	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0149563_52	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0149563_52	Structural annotation	PF07463, PF13392	NA	NA
UHGV-0149563_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0149563_53	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0149563_53	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0149563_53	Structural annotation	PF05772	NA	NA
UHGV-0149563_54	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0149563_54	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0149563_54	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0149563_54	Pfam	PF04404	ERF superfamily	ERF
UHGV-0149563_54	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0149563_60	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0149563_60	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0149563_60	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0149563_61	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0149563_61	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0149563_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149563_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0149563_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149563_62	UniRef90	UniRef90_A0A357CY43	HTH cro/C1-type domain-containing protein	NA
UHGV-0149563_62	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-0149563_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0149563_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149563_62	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0149563_63	Structural annotation	COG1321	NA	NA
UHGV-0149563_66	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0149563_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149563_67	KOfam	K14059	int; integrase	NA
UHGV-0149563_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0149563_67	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0149563_67	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0149563_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149563_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149563_67	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0149563_68	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0149563_69	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0149563_70	PHROG	phrog_16490	NA	unknown function
UHGV-0149563_70	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0149563_71	PHROG	phrog_22984	NA	unknown function
UHGV-0149563_74	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149563_74	PHROG	phrog_7698	endolysin	lysis
UHGV-0149563_74	UniRef90	UniRef90_A0A3C1LWK8	SPOR domain-containing protein	NA
UHGV-0149563_74	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149563_74	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0149563_74	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0149563_74	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0149563_74	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0149563_75	PHROG	phrog_881	holin	lysis
UHGV-0149563_75	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0149563_75	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0149563_75	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0149563_75	Structural annotation	PF16938	NA	NA
UHGV-0149563_76	PHROG	phrog_35892	NA	unknown function
UHGV-0149563_76	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0149563_76	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0149563_76	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0149563_77	PHROG	phrog_15594	NA	unknown function
UHGV-0149563_77	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0149563_77	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0149563_78	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA