UHGV-0149648

Genome information

Genome length 37,214 bps

CDS count 58

Completeness 97.19% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149648
vOTU ID	vOTU-076944
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_437850
BioSample	SAMN06016352
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.49
Jumbo phage	No

Genome content
Genome length	37,214 bps
GC content	43.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.47%
Average CDS length	589.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149648_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0149648_1	PHROG	phrog_291	endolysin	lysis
UHGV-0149648_1	UniRef90	UniRef90_A0A173YXL7	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-0149648_1	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0149648_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0149648_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0149648_1	Pfam	PF01476	LysM domain	LysM
UHGV-0149648_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0149648_1	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0149648_2	PHROG	phrog_443	holin	lysis
UHGV-0149648_2	UniRef90	UniRef90_UPI001C3AE2A9	Holin	NA
UHGV-0149648_2	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0149648_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0149648_2	Structural annotation	PF16945	NA	NA
UHGV-0149648_3	PHROG	phrog_1863	NA	unknown function
UHGV-0149648_3	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0149648_4	PHROG	phrog_5056	NA	unknown function
UHGV-0149648_4	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-0149648_4	Structural annotation	NF040910	NA	NA
UHGV-0149648_5	PHROG	phrog_5056	NA	unknown function
UHGV-0149648_5	eggNOG-mapper	1033738.CAEP01000136_gene2875	NA	NA
UHGV-0149648_5	Structural annotation	NF040910	NA	NA
UHGV-0149648_6	PHROG	phrog_12931	NA	unknown function
UHGV-0149648_6	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-0149648_8	PHROG	phrog_13141	NA	unknown function
UHGV-0149648_8	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0149648_8	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0149648_8	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0149648_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0149648_9	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0149648_9	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0149648_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0149648_9	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0149648_10	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0149648_10	eggNOG-mapper	411460.RUMTOR_02095	NA	NA
UHGV-0149648_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0149648_11	PHROG	phrog_5218	NA	unknown function
UHGV-0149648_11	UniRef90	UniRef90_A5KPB0	Phage tail tape measure protein, TP901 family	NA
UHGV-0149648_11	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0149648_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0149648_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0149648_11	COG	COG4487	NA	NA
UHGV-0149648_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0149648_12	eggNOG-mapper	537013.CLOSTMETH_01260	NA	NA
UHGV-0149648_13	PHROG	phrog_706	NA	unknown function
UHGV-0149648_13	UniRef90	UniRef90_A0A174B750	Bacteriophage Gp15 protein	NA
UHGV-0149648_13	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0149648_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0149648_13	Structural annotation	PF06854	NA	NA
UHGV-0149648_14	PHROG	phrog_4450	NA	unknown function
UHGV-0149648_14	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0149648_14	Pfam	PF20378	NA	DUF6673
UHGV-0149648_14	Structural annotation	PF20378	NA	NA
UHGV-0149648_15	PHROG	phrog_3099	NA	unknown function
UHGV-0149648_15	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0149648_15	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0149648_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0149648_16	PHROG	phrog_3266	tail completion	connector
UHGV-0149648_16	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-0149648_16	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0149648_16	Structural annotation	PF12691	NA	NA
UHGV-0149648_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0149648_17	UniRef90	UniRef90_A0A174B7G8	Minor capsid protein	NA
UHGV-0149648_17	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0149648_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0149648_17	Structural annotation	PF11114	NA	NA
UHGV-0149648_18	PHROG	phrog_3366	NA	unknown function
UHGV-0149648_18	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0149648_18	Pfam	PF20536	NA	DUF6751
UHGV-0149648_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0149648_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0149648_19	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0149648_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0149648_20	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0149648_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0149648_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0149648_21	UniRef90	UniRef90_UPI001EE04F4B	phage scaffolding protein	NA
UHGV-0149648_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0149648_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0149648_21	Structural annotation	PF06810	NA	NA
UHGV-0149648_22	eggNOG-mapper	411460.RUMTOR_02087	NA	NA
UHGV-0149648_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0149648_23	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0149648_23	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0149648_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0149648_23	COG	COG2369	NA	NA
UHGV-0149648_23	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0149648_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0149648_24	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-0149648_24	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0149648_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0149648_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149648_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0149648_25	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0149648_25	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0149648_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0149648_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0149648_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149648_25	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149648_26	PHROG	phrog_2412	NA	unknown function
UHGV-0149648_26	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0149648_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0149648_27	eggNOG-mapper	411460.RUMTOR_02083	NA	NA
UHGV-0149648_28	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0149648_28	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0149648_28	UniRef90	UniRef90_A5KP98	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0149648_28	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0149648_28	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0149648_28	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0149648_28	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0149648_29	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0149648_29	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0149648_29	UniRef90	UniRef90_A0A396PU56	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0149648_29	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0149648_29	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0149648_29	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0149648_29	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0149648_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149648_30	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0149648_30	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0149648_30	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0149648_31	PHROG	phrog_25555	NA	unknown function
UHGV-0149648_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0149648_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0149648_32	UniRef90	UniRef90_A0A828SYW6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0149648_32	eggNOG-mapper	411460.RUMTOR_02076	C-5 cytosine-specific DNA methylase	NA
UHGV-0149648_32	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0149648_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0149648_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0149648_32	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0149648_33	PHROG	phrog_25488	NA	unknown function
UHGV-0149648_33	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0149648_35	PHROG	phrog_3253	NA	unknown function
UHGV-0149648_35	eggNOG-mapper	411460.RUMTOR_02072	NA	NA
UHGV-0149648_36	PHROG	phrog_23374	NA	unknown function
UHGV-0149648_36	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0149648_38	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0149648_38	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0149648_38	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0149648_38	Pfam	PF06048	NA	DUF927
UHGV-0149648_38	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0149648_38	COG	COG5519	NA	NA
UHGV-0149648_38	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0149648_39	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0149648_39	PHROG	phrog_11992	NA	unknown function
UHGV-0149648_39	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0149648_39	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0149648_39	PADLOC	drt-UG29	DRT	DRT
UHGV-0149648_39	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0149648_39	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0149648_39	Structural annotation	PF01807	NA	NA
UHGV-0149648_40	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0149648_40	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0149648_40	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0149648_40	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0149648_40	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0149648_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149648_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149648_41	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0149648_41	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0149648_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149648_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149648_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149648_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149648_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0149648_42	PHROG	phrog_21649	NA	unknown function
UHGV-0149648_42	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0149648_42	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0149648_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0149648_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149648_42	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0149648_43	PHROG	phrog_674	NA	unknown function
UHGV-0149648_43	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0149648_43	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0149648_43	Pfam	PF07083	NA	DUF1351
UHGV-0149648_43	Structural annotation	PF07083	NA	NA
UHGV-0149648_44	PHROG	phrog_3777	NA	unknown function
UHGV-0149648_44	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0149648_44	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0149648_44	Pfam	PF12957	NA	DUF3846
UHGV-0149648_44	Structural annotation	PF12957	NA	NA
UHGV-0149648_46	PHROG	phrog_5070	NA	unknown function
UHGV-0149648_46	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0149648_46	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0149648_46	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0149648_46	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0149648_46	Structural annotation	NF040481, COG2171	NA	NA
UHGV-0149648_48	PHROG	phrog_22934	NA	unknown function
UHGV-0149648_50	PHROG	phrog_4298	NA	unknown function
UHGV-0149648_50	UniRef90	UniRef90_Q4ZDZ2	ORF076	NA
UHGV-0149648_50	eggNOG-mapper	694427.Palpr_0875	NA	NA
UHGV-0149648_54	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0149648_54	UniRef90	UniRef90_F3AXV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0149648_54	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0149648_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149648_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149648_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0149648_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149648_55	UniRef90	UniRef90_F3AXV8	HTH cro/C1-type domain-containing protein	NA
UHGV-0149648_55	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0149648_55	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0149648_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0149648_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0149648_56	PHROG	phrog_20886	NA	unknown function
UHGV-0149648_56	eggNOG-mapper	665950.HMPREF1025_02563	NA	NA
UHGV-0149648_56	Structural annotation	PF06114	NA	NA
UHGV-0149648_57	UniRef90	UniRef90_UPI000F54A0BC	lipoprotein	NA
UHGV-0149648_57	eggNOG-mapper	208439.AJAP_42555	NA	NA
UHGV-0149648_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0149648_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0149648_58	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-0149648_58	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0149648_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0149648_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0149648_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0149648_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149648_58	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA