UHGV-0149657

Genome information

vOTU vOTU-021916

Genome length 25,856 bps

CDS count 44

Completeness 50.47% (medium-quality)

geNomad score 0.9512

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149657
vOTU ID	vOTU-021916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_430865
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9512
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.3
Jumbo phage	No

Genome content
Genome length	25,856 bps
GC content	57.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	84.23%
Average CDS length	499.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149657_1	KOfam	K14059	int; integrase	NA
UHGV-0149657_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0149657_1	UniRef90	UniRef90_UPI000496F64A	tyrosine-type recombinase/integrase	NA
UHGV-0149657_1	eggNOG-mapper	246199.CUS_4420	Belongs to the 'phage' integrase family	NA
UHGV-0149657_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0149657_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149657_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149657_1	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0149657_2	eggNOG-mapper	1408428.JNJP01000012_gene1089	NA	NA
UHGV-0149657_3	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0149657_3	UniRef90	UniRef90_G1UY08	HTH cro/C1-type domain-containing protein	NA
UHGV-0149657_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149657_3	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-0149657_4	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0149657_4	UniRef90	UniRef90_A0A316N0G3	SAM-dependent methyltransferase	NA
UHGV-0149657_4	eggNOG-mapper	563192.HMPREF0179_05148	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0149657_4	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0149657_4	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0149657_4	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0149657_4	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0149657_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0149657_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0149657_5	UniRef90	UniRef90_G1UY10	PAPS_reduct domain-containing protein	NA
UHGV-0149657_5	eggNOG-mapper	1316936.K678_13318	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0149657_5	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0149657_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0149657_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0149657_5	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0149657_7	UniRef90	UniRef90_UPI001D0AEFDC	helix-turn-helix domain containing protein	NA
UHGV-0149657_7	eggNOG-mapper	563192.HMPREF0179_01774	sequence-specific DNA binding	NA
UHGV-0149657_7	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0149657_7	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0149657_8	eggNOG-mapper	563192.HMPREF0179_01773	NA	NA
UHGV-0149657_10	UniRef90	UniRef90_A0A7W8C1M3	DNA-directed RNA polymerase subunit RPC12/RpoP	NA
UHGV-0149657_10	eggNOG-mapper	1408428.JNJP01000133_gene2462	NA	NA
UHGV-0149657_11	PHROG	phrog_674	NA	unknown function
UHGV-0149657_11	UniRef90	UniRef90_UPI0013EE3DEB	NA	NA
UHGV-0149657_11	eggNOG-mapper	1408428.JNJP01000133_gene2461	NA	NA
UHGV-0149657_11	Pfam	PF07083	NA	DUF1351
UHGV-0149657_11	Structural annotation	PF07083	NA	NA
UHGV-0149657_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149657_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149657_12	UniRef90	UniRef90_G1UY14	Single-stranded DNA-binding protein	NA
UHGV-0149657_12	eggNOG-mapper	1408428.JNJP01000133_gene2460	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0149657_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149657_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149657_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149657_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149657_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149657_13	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0149657_13	UniRef90	UniRef90_UPI001D09A1C9	ERF family protein	NA
UHGV-0149657_13	eggNOG-mapper	1408428.JNJP01000133_gene2459	ERF superfamily	NA
UHGV-0149657_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0149657_20	Structural annotation	PF13443, NF041677, COG1396	NA	NA
UHGV-0149657_21	UniRef90	UniRef90_A0A1B7XEK5	Amino acid-binding protein	NA
UHGV-0149657_21	eggNOG-mapper	563192.HMPREF0179_01762	NA	NA
UHGV-0149657_21	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0149657_21	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0149657_24	PHROG	phrog_7995	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0149657_24	UniRef90	UniRef90_UPI000552DF5B	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0149657_24	eggNOG-mapper	1304872.JAGC01000009_gene787	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0149657_24	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0149657_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0149657_24	Structural annotation	PF05014, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0149657_25	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0149657_25	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0149657_25	UniRef90	UniRef90_UPI00068CE7E4	helix-turn-helix transcriptional regulator	NA
UHGV-0149657_25	eggNOG-mapper	563192.HMPREF0179_01760	sequence-specific DNA binding	NA
UHGV-0149657_25	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0149657_25	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0149657_25	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0149657_26	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0149657_26	eggNOG-mapper	1408428.JNJP01000132_gene2356	NA	NA
UHGV-0149657_26	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0149657_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0149657_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0149657_27	UniRef90	UniRef90_E5Y6E3	Anti-repressor protein	NA
UHGV-0149657_27	eggNOG-mapper	563192.HMPREF0179_01756	BRO family, N-terminal domain	NA
UHGV-0149657_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0149657_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0149657_27	COG	COG3617	Prophage antirepressor	NA
UHGV-0149657_27	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0149657_28	UniRef90	UniRef90_UPI001EDB188E	RNA helicase	NA
UHGV-0149657_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0149657_29	UniRef90	UniRef90_UPI001D09F98A	helix-turn-helix domain-containing protein	NA
UHGV-0149657_29	eggNOG-mapper	563192.HMPREF0179_01754	DnaD domain protein	NA
UHGV-0149657_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0149657_29	Structural annotation	PF07106, TIGR01610, COG0735	NA	NA
UHGV-0149657_30	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0149657_30	UniRef90	UniRef90_E5Y6E0	Mor domain-containing protein	NA
UHGV-0149657_30	eggNOG-mapper	563192.HMPREF0179_01753	NA	NA
UHGV-0149657_30	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0149657_30	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0149657_31	PHROG	phrog_824	NA	unknown function
UHGV-0149657_31	UniRef90	UniRef90_E5Y6D9	VRR-NUC domain-containing protein	NA
UHGV-0149657_31	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0149657_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0149657_34	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0149657_34	PHROG	phrog_894	endolysin	lysis
UHGV-0149657_34	UniRef90	UniRef90_S2KWS0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0149657_34	eggNOG-mapper	1408428.JNJP01000012_gene1106	Peptidase M15	NA
UHGV-0149657_34	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0149657_34	COG	COG3108	NA	NA
UHGV-0149657_34	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0149657_36	eggNOG-mapper	1408428.JNJP01000009_gene1353	NA	NA
UHGV-0149657_37	eggNOG-mapper	457398.HMPREF0326_02526	NA	NA
UHGV-0149657_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0149657_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0149657_39	UniRef90	UniRef90_G1V4W2	PAPS_reduct domain-containing protein	NA
UHGV-0149657_39	eggNOG-mapper	1408428.JNJP01000066_gene1733	sulfate reduction	NA
UHGV-0149657_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0149657_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0149657_39	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0149657_40	PHROG	phrog_9353	NA	unknown function
UHGV-0149657_40	UniRef90	UniRef90_A0A4P5P3Z7	ParB domain-containing protein	NA
UHGV-0149657_40	eggNOG-mapper	1408428.JNJP01000066_gene1732	DNA binding	NA
UHGV-0149657_40	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0149657_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0149657_40	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0149657_41	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0149657_41	PHROG	phrog_3193	NA	unknown function
UHGV-0149657_41	UniRef90	UniRef90_G1V4W4	ASCH domain-containing protein	NA
UHGV-0149657_41	eggNOG-mapper	1408428.JNJP01000066_gene1731	NA	NA
UHGV-0149657_41	Pfam	PF04266	ASCH domain	ASCH
UHGV-0149657_42	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0149657_42	AcrCatalog	cluster_60149	NA	NA
UHGV-0149657_42	NCBIFam	NF041373.1	HGGxSTG domain-containing protein	NA
UHGV-0149657_42	COG	COG3131	Periplasmic glucan biosynthesis protein OpgG	NA
UHGV-0149657_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149657_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0149657_43	UniRef90	UniRef90_A0A1V5XQ64	Terminase-like family protein	NA
UHGV-0149657_43	eggNOG-mapper	1408428.JNJP01000066_gene1729	phage Terminase large subunit	NA
UHGV-0149657_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149657_43	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149657_44	PHROG	phrog_145	portal protein	head and packaging
UHGV-0149657_44	UniRef90	UniRef90_G1V4W7	NA	NA
UHGV-0149657_44	eggNOG-mapper	1408428.JNJP01000066_gene1728	NA	NA
UHGV-0149657_44	Pfam	PF13264	NA	DUF4055