UHGV-0149668

Genome information

Genome length 32,351 bps

CDS count 46

Completeness 69.39% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149668
vOTU ID	vOTU-027394
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394748
BioSample	SAMN04436705
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.71
Jumbo phage	No

Genome content
Genome length	32,351 bps
GC content	53.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.14%
Average CDS length	665.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149668_1	PHROG	phrog_5137	NA	unknown function
UHGV-0149668_1	UniRef90	UniRef90_A0A605G9S0	NA	NA
UHGV-0149668_1	eggNOG-mapper	634499.EpC_13160	NA	NA
UHGV-0149668_1	Pfam	PF11236	NA	DUF3037
UHGV-0149668_1	Structural annotation	PF11236, PF11103	NA	NA
UHGV-0149668_2	PHROG	phrog_3162	NA	unknown function
UHGV-0149668_2	eggNOG-mapper	634499.EpC_13170	NA	NA
UHGV-0149668_2	Pfam	PF20613	HipA-like kinase	HipA_2
UHGV-0149668_2	Structural annotation	PF20613, MF_00521, NF011460, COG0478	NA	NA
UHGV-0149668_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0149668_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0149668_3	UniRef90	UniRef90_A0A0F1A1Y6	Repressor	NA
UHGV-0149668_3	eggNOG-mapper	634500.EbC_32020	repressor	NA
UHGV-0149668_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149668_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0149668_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0149668_3	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0149668_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0149668_4	UniRef90	UniRef90_A0A0F1A1V3	XRE family transcriptional regulator	NA
UHGV-0149668_4	eggNOG-mapper	199310.c1547	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149668_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149668_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0149668_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0149668_5	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0149668_5	UniRef90	UniRef90_A0A839BLB6	YdaT_toxin domain-containing protein	NA
UHGV-0149668_5	eggNOG-mapper	693444.D782_2510	Putative bacterial toxin ydaT	NA
UHGV-0149668_5	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0149668_5	Structural annotation	PF06254	NA	NA
UHGV-0149668_6	PHROG	phrog_1913	tail protein	tail
UHGV-0149668_6	UniRef90	UniRef90_A0A4U6LP71	NA	NA
UHGV-0149668_6	eggNOG-mapper	1005994.GTGU_01490	NA	NA
UHGV-0149668_7	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0149668_7	UniRef90	UniRef90_R4YC54	Phage_rep_O domain-containing protein	NA
UHGV-0149668_7	eggNOG-mapper	716541.ECL_01305	Bacteriophage replication protein O	NA
UHGV-0149668_7	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0149668_7	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0149668_7	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0149668_7	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0149668_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0149668_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0149668_8	UniRef90	UniRef90_A0A377YER6	DNA helicase	NA
UHGV-0149668_8	eggNOG-mapper	716541.ECL_01306	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0149668_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0149668_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0149668_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0149668_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0149668_9	PHROG	phrog_142	Ren-like exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0149668_9	UniRef90	UniRef90_A0A0H3CJX4	Ren protein from phage origin	NA
UHGV-0149668_9	eggNOG-mapper	716541.ECL_01307	NA	NA
UHGV-0149668_9	Structural annotation	PF04703, MF_01819, NF006812, COG4901	NA	NA
UHGV-0149668_10	PHROG	phrog_12906	NA	unknown function
UHGV-0149668_11	UniRef90	UniRef90_UPI00125C6E84	NA	NA
UHGV-0149668_11	eggNOG-mapper	716541.ECL_03603	NA	NA
UHGV-0149668_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0149668_13	UniRef90	UniRef90_UPI0007958C60	recombination protein NinB	NA
UHGV-0149668_13	eggNOG-mapper	1005994.GTGU_00288	bubble DNA binding	NA
UHGV-0149668_13	Pfam	PF05772	NinB protein	NinB
UHGV-0149668_13	NCBIFam	NF007281.0	hypothetical protein	NA
UHGV-0149668_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0149668_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149668_14	UniRef90	UniRef90_UPI00136A9BB8	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0149668_14	eggNOG-mapper	411154.GFO_2427	NUMOD4 motif	NA
UHGV-0149668_14	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0149668_14	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0149668_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0149668_14	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0149668_15	PHROG	phrog_288	NA	unknown function
UHGV-0149668_15	UniRef90	UniRef90_A0A6N7KBZ0	NinE family protein	NA
UHGV-0149668_15	eggNOG-mapper	571.MC52_23650	NA	NA
UHGV-0149668_15	Pfam	PF05322	NINE Protein	NinE
UHGV-0149668_15	NCBIFam	NF007245.0	NinE family protein	NA
UHGV-0149668_16	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149668_16	UniRef90	UniRef90_A0A1F2M9N0	NinG family protein	NA
UHGV-0149668_16	eggNOG-mapper	34506.g5961	Cold shock protein domain	NA
UHGV-0149668_16	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0149668_16	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0149668_16	Structural annotation	PF05766	NA	NA
UHGV-0149668_17	UniRef90	UniRef90_A0A6D0DDL1	Lar family restriction alleviation protein	NA
UHGV-0149668_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0149668_17	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0149668_17	Structural annotation	PF14354	NA	NA
UHGV-0149668_19	PHROG	phrog_304	anti-termination protein Q-like	transcription regulation
UHGV-0149668_19	UniRef90	UniRef90_A0A6G3F0V4	Antiterminator	NA
UHGV-0149668_19	eggNOG-mapper	1045856.EcWSU1_02328	Phage antitermination protein Q	NA
UHGV-0149668_19	Pfam	PF06323	Phage antitermination protein Q	Phage_antiter_Q
UHGV-0149668_19	Structural annotation	PF06323	NA	NA
UHGV-0149668_20	PHROG	phrog_20	holin	lysis
UHGV-0149668_20	UniRef90	UniRef90_A0A7U3LTV2	Lysis S family protein	NA
UHGV-0149668_20	eggNOG-mapper	716541.ECL_01318	Bacteriophage P21 holin S	NA
UHGV-0149668_20	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0149668_20	Structural annotation	PF04971	NA	NA
UHGV-0149668_21	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0149668_21	PHROG	phrog_7	endolysin	lysis
UHGV-0149668_21	UniRef90	UniRef90_A0A6G5YHF7	Lysozyme	NA
UHGV-0149668_21	eggNOG-mapper	10713.M9P0E5_BPPH8	Phage lysozyme	NA
UHGV-0149668_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0149668_21	HAMAP	MF_04110	Endolysin	NA
UHGV-0149668_21	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0149668_22	PHROG	phrog_16585	NA	unknown function
UHGV-0149668_23	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0149668_23	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0149668_23	UniRef90	UniRef90_A0A6S5XZD6	Endopeptidase	NA
UHGV-0149668_23	eggNOG-mapper	10713.M9NYX9_BPPH8	Bacteriophage Rz lysis protein	NA
UHGV-0149668_23	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0149668_23	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0149668_23	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0149668_24	PHROG	phrog_34701	NA	unknown function
UHGV-0149668_25	PHROG	phrog_6581	NA	unknown function
UHGV-0149668_25	eggNOG-mapper	716541.ECL_03204	NA	NA
UHGV-0149668_25	Structural annotation	PF06004, MF_00436, NF033216, COG1923	NA	NA
UHGV-0149668_26	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0149668_26	UniRef90	UniRef90_A0A4Y1NRD0	Terminase small subunit	NA
UHGV-0149668_26	eggNOG-mapper	1115512.EH105704_01_02370	NA	NA
UHGV-0149668_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149668_27	PHROG	phrog_2472	NA	unknown function
UHGV-0149668_27	UniRef90	UniRef90_A0A0T9TYL7	Terminase large subunit	NA
UHGV-0149668_27	eggNOG-mapper	1028307.EAE_22315	Terminase	NA
UHGV-0149668_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149668_27	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG1783	NA	NA
UHGV-0149668_28	KOfam	K09961	NA	NA
UHGV-0149668_28	PHROG	phrog_146	portal protein	head and packaging
UHGV-0149668_28	UniRef90	UniRef90_D2ZDZ8	Putative phage-associated protein, HI1409 family	NA
UHGV-0149668_28	eggNOG-mapper	1115512.EH105704_01_02350	NA	NA
UHGV-0149668_28	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0149668_28	COG	COG3567	NA	NA
UHGV-0149668_28	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0149668_29	PHROG	phrog_758	head morphogenesis	head and packaging
UHGV-0149668_29	UniRef90	UniRef90_A0A8H8X1J6	Phage_Mu_F domain-containing protein	NA
UHGV-0149668_29	eggNOG-mapper	571.MC52_15155	Phage Mu protein F like protein	NA
UHGV-0149668_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0149668_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0149668_29	COG	COG2369	NA	NA
UHGV-0149668_29	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0149668_30	PHROG	phrog_17948	NA	unknown function
UHGV-0149668_31	PHROG	phrog_760	NA	unknown function
UHGV-0149668_31	UniRef90	UniRef90_UPI0012B72000	NA	NA
UHGV-0149668_31	eggNOG-mapper	911008.GLAD_00713	protein conserved in bacteria	NA
UHGV-0149668_31	Pfam	PF09979	NA	DUF2213
UHGV-0149668_31	COG	COG3566	NA	NA
UHGV-0149668_31	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0149668_32	PHROG	phrog_766	head decoration	head and packaging
UHGV-0149668_32	UniRef90	UniRef90_A0A4Y1NRB3	Capsid protein	NA
UHGV-0149668_32	eggNOG-mapper	1028307.EAE_22290	NA	NA
UHGV-0149668_32	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0149668_33	PHROG	phrog_771	virion structural protein	head and packaging
UHGV-0149668_33	UniRef90	UniRef90_A0A447L733	Gp9	NA
UHGV-0149668_33	eggNOG-mapper	1028307.EAE_22285	NA	NA
UHGV-0149668_33	Pfam	PF19774	NA	DUF6260
UHGV-0149668_33	Structural annotation	PF19774, MF_04119, NF041155, COG4834	NA	NA
UHGV-0149668_34	PHROG	phrog_25242	NA	unknown function
UHGV-0149668_34	eggNOG-mapper	1028307.EAE_22280	NA	NA
UHGV-0149668_34	Structural annotation	PF20873	NA	NA
UHGV-0149668_35	PHROG	phrog_786	NA	unknown function
UHGV-0149668_35	eggNOG-mapper	1286170.RORB6_10120	NA	NA
UHGV-0149668_36	PHROG	phrog_1261	NA	unknown function
UHGV-0149668_36	UniRef90	UniRef90_A0A4V6JJF9	50S ribosomal protein L13	NA
UHGV-0149668_36	eggNOG-mapper	716541.ECL_03192	NA	NA
UHGV-0149668_37	PHROG	phrog_797	NA	unknown function
UHGV-0149668_37	eggNOG-mapper	1286170.RORB6_10105	NA	NA
UHGV-0149668_37	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0149668_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149668_38	UniRef90	UniRef90_A0A7V7JIL2	HK97 gp10 family phage protein	NA
UHGV-0149668_38	eggNOG-mapper	640513.Entas_2672	NA	NA
UHGV-0149668_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0149668_39	PHROG	phrog_782	NA	unknown function
UHGV-0149668_39	eggNOG-mapper	911008.GLAD_00705	NA	NA
UHGV-0149668_39	Structural annotation	PF12691	NA	NA
UHGV-0149668_40	PHROG	phrog_853	major tail protein	tail
UHGV-0149668_40	UniRef90	UniRef90_A0A7R8RD80	DNA breaking-rejoining protein	NA
UHGV-0149668_40	eggNOG-mapper	1225184.ALXE01000018_gene3834	Bacterial Ig-like domain 2	NA
UHGV-0149668_40	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0149668_40	COG	COG5492	NA	NA
UHGV-0149668_40	Structural annotation	PF02368, PF06199, MF_04116, TIGR02126, TIGR04225, COG5437	NA	NA
UHGV-0149668_41	PHROG	phrog_791	NA	unknown function
UHGV-0149668_41	UniRef90	UniRef90_UPI00101D64FD	NA	NA
UHGV-0149668_41	eggNOG-mapper	1115512.EH105704_01_02210	NA	NA
UHGV-0149668_41	Pfam	PF19759	NA	DUF6246
UHGV-0149668_41	Structural annotation	PF19759	NA	NA
UHGV-0149668_42	PHROG	phrog_1107	tail length tape measure protein	tail
UHGV-0149668_42	UniRef90	UniRef90_UPI00079A421D	tape measure protein	NA
UHGV-0149668_42	eggNOG-mapper	716541.ECL_03186	tape measure protein	NA
UHGV-0149668_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0149668_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0149668_42	COG	COG3096	Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB	NA
UHGV-0149668_42	Structural annotation	PF20155, PF06120, COG5281	NA	NA
UHGV-0149668_43	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0149668_43	eggNOG-mapper	716541.ECL_03185	NA	NA
UHGV-0149668_43	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0149668_44	PHROG	phrog_396	minor tail protein	tail
UHGV-0149668_44	UniRef90	UniRef90_A0A345CB33	NA	NA
UHGV-0149668_44	eggNOG-mapper	716541.ECL_01343	NA	NA
UHGV-0149668_44	Structural annotation	PF08875, MF_00833, TIGR01600, COG4672	NA	NA
UHGV-0149668_45	PHROG	phrog_329	minor tail protein	tail
UHGV-0149668_45	UniRef90	UniRef90_A0A133LJ27	NlpC/P60 family protein	NA
UHGV-0149668_45	eggNOG-mapper	1399774.JDWH01000028_gene3614	NlpC/P60 family	NA
UHGV-0149668_45	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0149668_45	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0149668_45	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0149668_46	PHROG	phrog_469	tail protein	tail
UHGV-0149668_46	UniRef90	UniRef90_A0A837JMD5	Phage tail protein	NA
UHGV-0149668_46	eggNOG-mapper	716541.ECL_01345	cellulase activity	NA
UHGV-0149668_46	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0149668_46	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0149668_46	Structural annotation	PF13550, PF02597, PF14879, MF_00460, NF040662, NF006231, COG4733, COG2104	NA	NA