UHGV-0149716

Genome information

vOTU vOTU-019460

Genome length 41,640 bps

CDS count 74

Completeness 69.20% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149716
vOTU ID	vOTU-019460
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_415340
BioSample	SAMN05414961
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.52
Jumbo phage	No

Genome content
Genome length	41,640 bps
GC content	40.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	90.44%
Average CDS length	512.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149716_4	Structural annotation	PF20593	NA	NA
UHGV-0149716_5	Structural annotation	PF04347	NA	NA
UHGV-0149716_7	PHROG	phrog_8680	NA	unknown function
UHGV-0149716_7	UniRef90	UniRef90_A0A3R6E2A5	NA	NA
UHGV-0149716_7	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0149716_7	Pfam	PF14386	NA	DUF4417
UHGV-0149716_7	Structural annotation	PF14386	NA	NA
UHGV-0149716_8	PHROG	phrog_1233	NA	unknown function
UHGV-0149716_8	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0149716_8	Structural annotation	PF13058	NA	NA
UHGV-0149716_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0149716_9	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0149716_9	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-0149716_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0149716_9	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0149716_9	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0149716_9	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0149716_12	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0149716_12	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0149716_12	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0149716_13	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0149716_14	PHROG	phrog_20016	NA	unknown function
UHGV-0149716_14	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0149716_14	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0149716_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0149716_15	PHROG	phrog_16490	NA	unknown function
UHGV-0149716_15	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0149716_16	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0149716_17	PHROG	phrog_21718	NA	unknown function
UHGV-0149716_17	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0149716_17	Structural annotation	NF033819	NA	NA
UHGV-0149716_18	eggNOG-mapper	658655.HMPREF0988_00920	NA	NA
UHGV-0149716_19	KOfam	K14059	int; integrase	NA
UHGV-0149716_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0149716_19	UniRef90	UniRef90_A0A3R6B6C8	Site-specific integrase	NA
UHGV-0149716_19	eggNOG-mapper	411461.DORFOR_02986	NA	NA
UHGV-0149716_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149716_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149716_19	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0149716_20	UniRef90	UniRef90_A0A413Z5X3	LuxR family transcriptional regulator	NA
UHGV-0149716_20	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0149716_20	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0149716_20	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0149716_21	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0149716_24	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0149716_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0149716_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0149716_25	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0149716_25	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0149716_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0149716_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0149716_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0149716_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0149716_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0149716_26	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0149716_26	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0149716_26	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0149716_26	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0149716_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0149716_26	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0149716_30	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149716_30	UniRef90	UniRef90_A0A413YTK1	NA	NA
UHGV-0149716_30	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0149716_30	Pfam	PF12961	NA	DUF3850
UHGV-0149716_30	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0149716_31	PHROG	phrog_874	NA	unknown function
UHGV-0149716_31	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0149716_31	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0149716_31	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0149716_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0149716_32	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149716_32	UniRef90	UniRef90_A0A413SFY3	HNH endonuclease	NA
UHGV-0149716_32	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0149716_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149716_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149716_32	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0149716_33	PHROG	phrog_20593	NA	unknown function
UHGV-0149716_35	PHROG	phrog_8684	NA	unknown function
UHGV-0149716_35	UniRef90	UniRef90_A0A414RA52	YopX domain-containing protein	NA
UHGV-0149716_35	Pfam	PF09643	YopX protein	YopX
UHGV-0149716_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0149716_37	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0149716_39	PHROG	phrog_15198	NA	unknown function
UHGV-0149716_39	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0149716_39	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0149716_39	Pfam	PF04448	NA	DUF551
UHGV-0149716_39	Structural annotation	NF041588	NA	NA
UHGV-0149716_40	PHROG	phrog_21026	NA	unknown function
UHGV-0149716_42	Structural annotation	PF17399	NA	NA
UHGV-0149716_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0149716_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0149716_45	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0149716_45	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0149716_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0149716_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0149716_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-0149716_45	Structural annotation	PF03796, MF_04154, NF005240, COG0305	NA	NA
UHGV-0149716_46	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0149716_46	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0149716_46	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0149716_46	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0149716_46	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0149716_46	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0149716_47	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0149716_47	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0149716_47	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0149716_47	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0149716_47	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0149716_48	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0149716_48	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0149716_48	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-0149716_48	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0149716_48	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0149716_48	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0149716_48	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0149716_50	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0149716_50	PHROG	phrog_11371	NA	unknown function
UHGV-0149716_50	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0149716_50	eggNOG-mapper	1170318.PALO_02835	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0149716_50	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0149716_50	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0149716_50	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-0149716_51	KOfam	K06940	NA	NA
UHGV-0149716_51	PHROG	phrog_32498	NA	unknown function
UHGV-0149716_51	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0149716_51	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0149716_51	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0149716_52	PHROG	phrog_25456	NA	unknown function
UHGV-0149716_53	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0149716_53	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0149716_53	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0149716_53	Pfam	PF03837	RecT family	RecT
UHGV-0149716_53	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0149716_55	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0149716_56	PHROG	phrog_4433	NA	unknown function
UHGV-0149716_56	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0149716_56	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0149716_58	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0149716_58	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149716_58	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0149716_58	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0149716_58	Pfam	PF13476	AAA domain	AAA_23
UHGV-0149716_58	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0149716_58	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0149716_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149716_60	PHROG	phrog_26861	NA	unknown function
UHGV-0149716_60	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-0149716_60	eggNOG-mapper	397288.C806_01037	Single-strand binding protein family	NA
UHGV-0149716_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149716_60	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0149716_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149716_60	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0149716_62	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0149716_62	PHROG	phrog_37855	NA	unknown function
UHGV-0149716_62	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-0149716_62	eggNOG-mapper	1507.HMPREF0262_01330	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0149716_62	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0149716_62	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0149716_62	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0149716_63	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0149716_63	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0149716_63	UniRef90	UniRef90_A0A1Q9J883	Toxin Bro	NA
UHGV-0149716_63	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0149716_63	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0149716_63	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0149716_63	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0149716_65	UniRef90	UniRef90_A0A3R6F9H0	XRE family transcriptional regulator	NA
UHGV-0149716_65	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149716_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149716_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149716_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0149716_67	PHROG	phrog_17196	kinase	other
UHGV-0149716_67	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0149716_67	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0149716_69	PHROG	phrog_18190	NA	unknown function
UHGV-0149716_69	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0149716_69	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0149716_69	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0149716_69	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0149716_70	PHROG	phrog_1194	NA	unknown function
UHGV-0149716_70	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0149716_70	Pfam	PF20458	NA	DUF6711
UHGV-0149716_70	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0149716_73	PHROG	phrog_14275	NA	unknown function
UHGV-0149716_73	eggNOG-mapper	689781.AUJX01000006_gene893	NA	NA
UHGV-0149716_73	Structural annotation	PF11355, PF18368, TIGR02588, NF038353, COG5633	NA	NA
UHGV-0149716_74	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0149716_74	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA