UHGV-0149725

Genome information

vOTU vOTU-019461

Genome length 30,368 bps

CDS count 48

Completeness 70.52% (medium-quality)

geNomad score 0.9537

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149725
vOTU ID	vOTU-019461
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_432932
BioSample	SAMN05544800
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9537
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.25
Jumbo phage	No

Genome content
Genome length	30,368 bps
GC content	60.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.71%
Average CDS length	596.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149725_1	UniRef90	UniRef90_A0A1Y4WNE2	XRE family transcriptional regulator	NA
UHGV-0149725_1	eggNOG-mapper	742738.HMPREF9460_02464	NA	NA
UHGV-0149725_1	Structural annotation	PF03592	NA	NA
UHGV-0149725_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149725_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0149725_2	UniRef90	UniRef90_A0A096DBA5	PBSX family phage terminase, large subunit	NA
UHGV-0149725_2	eggNOG-mapper	742738.HMPREF9460_02465	Terminase-like family	NA
UHGV-0149725_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0149725_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0149725_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0149725_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149725_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149725_3	PHROG	phrog_30703	portal protein	head and packaging
UHGV-0149725_3	UniRef90	UniRef90_A0A1Y4WND9	Serine/threonine protein phosphatase	NA
UHGV-0149725_3	eggNOG-mapper	742738.HMPREF9460_02466	NA	NA
UHGV-0149725_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149725_4	PHROG	phrog_16951	NA	unknown function
UHGV-0149725_4	eggNOG-mapper	742738.HMPREF9460_02467	NA	NA
UHGV-0149725_4	Structural annotation	PF04586, TIGR01543, COG3566	NA	NA
UHGV-0149725_5	PHROG	phrog_4588	NA	unknown function
UHGV-0149725_5	eggNOG-mapper	742738.HMPREF9460_02468	NA	NA
UHGV-0149725_5	Structural annotation	PF02989, COG5471	NA	NA
UHGV-0149725_6	PHROG	phrog_3922	major head protein	head and packaging
UHGV-0149725_6	UniRef90	UniRef90_A0A1C7FM61	Major capsid protein	NA
UHGV-0149725_6	eggNOG-mapper	742738.HMPREF9460_02469	NA	NA
UHGV-0149725_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149725_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149725_7	eggNOG-mapper	742738.HMPREF9460_02470	NA	NA
UHGV-0149725_8	eggNOG-mapper	742738.HMPREF9460_02471	NA	NA
UHGV-0149725_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0149725_9	PHROG	phrog_25177	NA	unknown function
UHGV-0149725_9	eggNOG-mapper	742738.HMPREF9460_02472	NA	NA
UHGV-0149725_9	Structural annotation	PF09646	NA	NA
UHGV-0149725_10	PHROG	phrog_279	tail sheath	tail
UHGV-0149725_10	UniRef90	UniRef90_A0A1Y3RGJ9	Phage tail sheath protein	NA
UHGV-0149725_10	eggNOG-mapper	742738.HMPREF9460_02473	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0149725_10	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0149725_10	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0149725_10	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0149725_10	Structural annotation	PF10758, TIGR03355, COG4386	NA	NA
UHGV-0149725_11	PHROG	phrog_27038	NA	unknown function
UHGV-0149725_11	eggNOG-mapper	742738.HMPREF9460_02474	NA	NA
UHGV-0149725_11	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0149725_12	eggNOG-mapper	411467.BACCAP_00290	NA	NA
UHGV-0149725_13	UniRef90	UniRef90_A0A1C7FK97	Molybdopterin oxidoreductase	NA
UHGV-0149725_13	eggNOG-mapper	411467.BACCAP_00289	NA	NA
UHGV-0149725_15	KOfam	K06370	safA; morphogenetic protein associated with SpoVID	NA
UHGV-0149725_15	PHROG	phrog_14642	endolysin	lysis
UHGV-0149725_15	UniRef90	UniRef90_A0A096B6Z9	LysM domain-containing protein	NA
UHGV-0149725_15	eggNOG-mapper	742738.HMPREF9460_02476	DNA circularisation protein N-terminus	NA
UHGV-0149725_15	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0149725_15	Pfam	PF01476	LysM domain	LysM
UHGV-0149725_15	COG	COG1388	LysM repeat	NA
UHGV-0149725_15	Structural annotation	PF19512, PF01476, TIGR02899, TIGR01633, COG1388, COG4718	NA	NA
UHGV-0149725_16	PHROG	phrog_177	tail protein	tail
UHGV-0149725_16	UniRef90	UniRef90_A0A1C6H5C2	Mu-like prophage tail protein gpP	NA
UHGV-0149725_16	eggNOG-mapper	742738.HMPREF9460_02477	tail protein	NA
UHGV-0149725_16	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0149725_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0149725_17	PHROG	phrog_25991	NA	unknown function
UHGV-0149725_17	eggNOG-mapper	742738.HMPREF9460_02478	NA	NA
UHGV-0149725_17	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0149725_18	eggNOG-mapper	742738.HMPREF9460_02479	NA	NA
UHGV-0149725_18	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0149725_19	PHROG	phrog_6	baseplate protein	tail
UHGV-0149725_19	UniRef90	UniRef90_A0A096DBD2	Baseplate_J domain-containing protein	NA
UHGV-0149725_19	eggNOG-mapper	742738.HMPREF9460_02480	Baseplate J-like protein	NA
UHGV-0149725_19	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0149725_19	COG	COG3299	NA	NA
UHGV-0149725_19	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0149725_20	PHROG	phrog_521	tail protein	tail
UHGV-0149725_20	UniRef90	UniRef90_UPI0019573C35	NA	NA
UHGV-0149725_20	eggNOG-mapper	742738.HMPREF9460_02481	Protein conserved in bacteria	NA
UHGV-0149725_20	COG	COG3778	NA	NA
UHGV-0149725_20	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0149725_21	KOfam	K14059	int; integrase	NA
UHGV-0149725_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0149725_21	UniRef90	UniRef90_G9YWB3	Site-specific recombinase, phage integrase family	NA
UHGV-0149725_21	eggNOG-mapper	742738.HMPREF9460_02482	Phage integrase family	NA
UHGV-0149725_21	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0149725_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149725_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149725_21	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0149725_22	PHROG	phrog_33872	NA	unknown function
UHGV-0149725_22	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0149725_23	PHROG	phrog_17658	NA	unknown function
UHGV-0149725_23	UniRef90	UniRef90_A0A6I0EWR4	Zinc-ribbon domain-containing protein	NA
UHGV-0149725_23	eggNOG-mapper	742738.HMPREF9460_02484	NA	NA
UHGV-0149725_24	PHROG	phrog_87	metallo-protease	other
UHGV-0149725_24	UniRef90	UniRef90_G9YWB6	Peptidase_M78 domain-containing protein	NA
UHGV-0149725_24	eggNOG-mapper	445972.ANACOL_01758	NA	NA
UHGV-0149725_24	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0149725_24	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0149725_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149725_25	UniRef90	UniRef90_G9YWB7	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0149725_25	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149725_25	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0149725_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0149725_25	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0149725_26	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0149725_26	UniRef90	UniRef90_G9YWB8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0149725_26	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0149725_26	Structural annotation	TIGR03070	NA	NA
UHGV-0149725_27	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0149725_27	UniRef90	UniRef90_H1C928	Rha family phage regulatory protein	NA
UHGV-0149725_27	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0149725_27	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0149725_27	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0149725_27	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0149725_28	eggNOG-mapper	742738.HMPREF9460_02488	NA	NA
UHGV-0149725_29	PHROG	phrog_7338	NA	unknown function
UHGV-0149725_29	UniRef90	UniRef90_A0A1C7FM84	HTH_17 domain-containing protein	NA
UHGV-0149725_29	eggNOG-mapper	742738.HMPREF9460_02489	Helix-turn-helix domain	NA
UHGV-0149725_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0149725_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0149725_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0149725_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0149725_34	PHROG	phrog_11992	NA	unknown function
UHGV-0149725_34	UniRef90	UniRef90_A0A096B603	ZnF_CHCC domain-containing protein	NA
UHGV-0149725_34	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0149725_34	PADLOC	drt-cluster192	DRT	DRT
UHGV-0149725_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0149725_34	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0149725_34	Structural annotation	PF01807	NA	NA
UHGV-0149725_35	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0149725_35	UniRef90	UniRef90_A0A173Y540	Superfamily II helicase and inactivated derivatives	NA
UHGV-0149725_35	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0149725_35	Pfam	PF06048	NA	DUF927
UHGV-0149725_35	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0149725_35	COG	COG5519	NA	NA
UHGV-0149725_35	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0149725_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0149725_38	UniRef90	UniRef90_A0A096CJ63	Bro-N domain-containing protein	NA
UHGV-0149725_38	eggNOG-mapper	742738.HMPREF9460_02498	BRO family, N-terminal domain	NA
UHGV-0149725_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0149725_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0149725_38	Structural annotation	PF02498, PF13560, NF041951, COG3617, COG3655	NA	NA
UHGV-0149725_39	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0149725_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0149725_39	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-0149725_39	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0149725_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0149725_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0149725_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0149725_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0149725_39	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0149725_40	PHROG	phrog_3253	NA	unknown function
UHGV-0149725_40	UniRef90	UniRef90_UPI0011773349	resolvase	NA
UHGV-0149725_40	Structural annotation	PF18618	NA	NA
UHGV-0149725_41	PHROG	phrog_824	NA	unknown function
UHGV-0149725_41	UniRef90	UniRef90_A0A096B719	VRR-NUC domain-containing protein	NA
UHGV-0149725_41	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0149725_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0149725_41	Structural annotation	PF08774	NA	NA
UHGV-0149725_43	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0149725_43	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0149725_44	PHROG	phrog_2412	NA	unknown function
UHGV-0149725_44	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0149725_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149725_45	PHROG	phrog_10250	NA	unknown function
UHGV-0149725_45	UniRef90	UniRef90_A0A096DBF3	PBSX family phage terminase, large subunit	NA
UHGV-0149725_45	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-0149725_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0149725_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0149725_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149725_45	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149725_46	KOfam	K09961	NA	NA
UHGV-0149725_46	PHROG	phrog_146	portal protein	head and packaging
UHGV-0149725_46	UniRef90	UniRef90_U2DFW0	Phage-associated protein, HI1409 family	NA
UHGV-0149725_46	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0149725_46	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0149725_46	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0149725_46	COG	COG3567	NA	NA
UHGV-0149725_46	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0149725_47	PHROG	phrog_34144	NA	unknown function
UHGV-0149725_47	eggNOG-mapper	742738.HMPREF9460_02507	NA	NA
UHGV-0149725_47	Structural annotation	PF20111	NA	NA
UHGV-0149725_48	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0149725_48	COG	COG4695	Phage portal protein BeeE	NA