UHGV-0149748

Genome information

Genome length 30,838 bps

CDS count 40

Completeness 70.35% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149748
vOTU ID	vOTU-027397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_431460
BioSample	SAMN05545085
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.62
Jumbo phage	No

Genome content
Genome length	30,838 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.08%
Average CDS length	721.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149748_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0149748_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0149748_1	UniRef90	UniRef90_A0A893WB48	Recombinase family protein	NA
UHGV-0149748_1	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0149748_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0149748_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0149748_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0149748_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0149748_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0149748_2	PHROG	phrog_9418	NA	unknown function
UHGV-0149748_2	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0149748_2	Structural annotation	PF10233	NA	NA
UHGV-0149748_3	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0149748_3	Pfam	PF16729	NA	DUF5067
UHGV-0149748_3	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0149748_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0149748_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149748_5	UniRef90	UniRef90_UPI001D09408C	helix-turn-helix domain-containing protein	NA
UHGV-0149748_5	eggNOG-mapper	536233.CLO_0953	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149748_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149748_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149748_5	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0149748_6	UniRef90	UniRef90_UPI00156EC6B6	helix-turn-helix domain-containing protein	NA
UHGV-0149748_6	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0149748_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0149748_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0149748_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0149748_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0149748_7	UniRef90	UniRef90_A0A396PS14	Phage antirepressor Ant	NA
UHGV-0149748_7	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0149748_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0149748_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0149748_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0149748_7	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0149748_9	PHROG	phrog_9958	NA	unknown function
UHGV-0149748_9	UniRef90	UniRef90_R5L718	NA	NA
UHGV-0149748_9	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0149748_9	Structural annotation	PF19789	NA	NA
UHGV-0149748_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0149748_10	UniRef90	UniRef90_UPI0018977FCD	AAA family ATPase	NA
UHGV-0149748_10	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0149748_10	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0149748_11	PHROG	phrog_236	nucleotide kinase	other
UHGV-0149748_11	UniRef90	UniRef90_UPI00189A6F6F	NA	NA
UHGV-0149748_11	eggNOG-mapper	469604.HMPREF0946_01115	NA	NA
UHGV-0149748_11	Pfam	PF11753	NA	DUF3310
UHGV-0149748_12	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0149748_12	UniRef90	UniRef90_A0A3B9DYG0	SLT domain-containing protein (Fragment)	NA
UHGV-0149748_12	eggNOG-mapper	935836.JAEL01000005_gene2693	Phage-related minor tail protein	NA
UHGV-0149748_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0149748_13	PHROG	phrog_1194	NA	unknown function
UHGV-0149748_13	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0149748_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0149748_14	PHROG	phrog_13879	NA	unknown function
UHGV-0149748_14	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0149748_14	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0149748_15	PHROG	phrog_18725	NA	unknown function
UHGV-0149748_15	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0149748_16	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0149748_17	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0149748_17	Structural annotation	NF012201	NA	NA
UHGV-0149748_18	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0149748_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0149748_18	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0149748_18	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0149748_18	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0149748_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149748_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0149748_18	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0149748_20	PHROG	phrog_9994	NA	unknown function
UHGV-0149748_20	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0149748_20	Structural annotation	PF20747	NA	NA
UHGV-0149748_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0149748_21	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0149748_21	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0149748_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0149748_21	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0149748_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0149748_22	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0149748_22	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0149748_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0149748_23	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0149748_23	PHROG	phrog_5218	NA	unknown function
UHGV-0149748_23	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-0149748_23	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0149748_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0149748_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0149748_23	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0149748_25	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-0149748_26	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0149748_26	Structural annotation	PF11836	NA	NA
UHGV-0149748_27	PHROG	phrog_88	major tail protein	tail
UHGV-0149748_27	UniRef90	UniRef90_A0A174HJR5	Major tail protein	NA
UHGV-0149748_27	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0149748_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0149748_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0149748_28	PHROG	phrog_88	major tail protein	tail
UHGV-0149748_28	UniRef90	UniRef90_A0A174HPA5	Phage major tail protein, phi13 family	NA
UHGV-0149748_28	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0149748_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0149748_28	COG	COG5492	NA	NA
UHGV-0149748_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0149748_29	PHROG	phrog_78	tail terminator	connector
UHGV-0149748_29	eggNOG-mapper	1094508.Tsac_2420	NA	NA
UHGV-0149748_29	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0149748_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149748_30	UniRef90	UniRef90_A0A174HPL7	Phage protein, HK97 gp10 family	NA
UHGV-0149748_30	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0149748_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0149748_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0149748_30	Structural annotation	TIGR01725	NA	NA
UHGV-0149748_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0149748_31	eggNOG-mapper	1280689.AUJC01000011_gene1524	NA	NA
UHGV-0149748_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149748_32	PHROG	phrog_5223	neck protein	connector
UHGV-0149748_32	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0149748_32	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-0149748_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149748_33	UniRef90	UniRef90_A0A174HPF0	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149748_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0149748_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149748_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149748_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0149748_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149748_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0149748_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0149748_34	UniRef90	UniRef90_A0A174HPB7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0149748_34	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0149748_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0149748_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0149748_34	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0149748_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0149748_35	UniRef90	UniRef90_A0A174HQ03	Phage portal protein, HK97 family	NA
UHGV-0149748_35	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0149748_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149748_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149748_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149748_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149748_36	UniRef90	UniRef90_A0A174HN48	Phage terminase-like protein, large subunit	NA
UHGV-0149748_36	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0149748_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149748_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149748_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149748_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149748_37	PHROG	phrog_1066	NA	unknown function
UHGV-0149748_37	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0149748_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0149748_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149748_38	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0149748_38	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0149748_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149748_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149748_40	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-0149748_40	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0149748_40	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA