UHGV-0149762

Genome information

Genome length 36,246 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149762
vOTU ID	vOTU-010513
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_421961
BioSample	SAMN05827160
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.51
Jumbo phage	No

Genome content
Genome length	36,246 bps
GC content	38.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.06%
Average CDS length	647.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149762_1	COG	COG2165	Type II secretory pathway, pseudopilin PulG	NA
UHGV-0149762_2	KOfam	K02654	pilD, pppA; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]	NA
UHGV-0149762_2	UniRef90	UniRef90_E4LDC5	Peptidase, A24 family	NA
UHGV-0149762_2	eggNOG-mapper	479436.Vpar_1081	aspartic-type endopeptidase activity	NA
UHGV-0149762_2	Pfam	PF01478	Type IV leader peptidase family	Peptidase_A24
UHGV-0149762_2	COG	COG1989	Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase	NA
UHGV-0149762_3	UniRef90	UniRef90_W1XAK8	Type II secretory pathway pseudopilin PulG-like protein (Fragment)	NA
UHGV-0149762_3	eggNOG-mapper	479436.Vpar_1082	General secretion pathway protein	NA
UHGV-0149762_3	COG	COG2165	Type II secretory pathway, pseudopilin PulG	NA
UHGV-0149762_5	PHROG	phrog_10797	NA	unknown function
UHGV-0149762_5	UniRef90	UniRef90_UPI0018C518C1	glycoprotease	NA
UHGV-0149762_5	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0149762_5	Structural annotation	PF06531	NA	NA
UHGV-0149762_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0149762_6	PHROG	phrog_6745	endolysin	lysis
UHGV-0149762_6	UniRef90	UniRef90_UPI001D0872FD	glycosyl hydrolase family 25	NA
UHGV-0149762_6	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0149762_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0149762_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0149762_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0149762_7	PHROG	phrog_199	holin	lysis
UHGV-0149762_7	UniRef90	UniRef90_UPI000E74DE8A	phage holin family protein	NA
UHGV-0149762_7	eggNOG-mapper	883156.HMPREF9282_00970	Bacteriophage holin family	NA
UHGV-0149762_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0149762_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0149762_8	PHROG	phrog_9854	NA	unknown function
UHGV-0149762_8	UniRef90	UniRef90_UPI000E7651BD	phage tail tip lysozyme	NA
UHGV-0149762_8	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0149762_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0149762_8	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0149762_8	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0149762_8	Structural annotation	PF18857, PF18013	NA	NA
UHGV-0149762_10	UniRef90	UniRef90_UPI001D07B8A4	Hint domain-containing protein	NA
UHGV-0149762_10	eggNOG-mapper	1123288.SOV_4c02760	NA	NA
UHGV-0149762_10	Pfam	PF13403	Hint domain	Hint_2
UHGV-0149762_10	Structural annotation	PF13403	NA	NA
UHGV-0149762_11	Structural annotation	PF11039, MF_00084, NF000482, COG3818	NA	NA
UHGV-0149762_14	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-0149762_14	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0149762_15	eggNOG-mapper	1123288.SOV_4c02700	NA	NA
UHGV-0149762_15	Structural annotation	PF20387	NA	NA
UHGV-0149762_16	Structural annotation	PF20387	NA	NA
UHGV-0149762_17	PHROG	phrog_334	major head protein	head and packaging
UHGV-0149762_17	UniRef90	UniRef90_UPI000E723A53	N4-gp56 family major capsid protein	NA
UHGV-0149762_17	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0149762_17	Pfam	PF13252	NA	DUF4043
UHGV-0149762_17	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0149762_17	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0149762_19	PHROG	phrog_156	portal protein	head and packaging
UHGV-0149762_19	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0149762_19	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0149762_19	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0149762_19	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0149762_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149762_21	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0149762_21	UniRef90	UniRef90_UPI001D07F325	phage terminase large subunit	NA
UHGV-0149762_21	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-0149762_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0149762_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149762_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0149762_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0149762_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0149762_22	UniRef90	UniRef90_UPI001D073EE5	terminase small subunit	NA
UHGV-0149762_22	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0149762_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0149762_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0149762_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0149762_26	UniRef90	UniRef90_A0A847PRP4	Helix-turn-helix transcriptional regulator	NA
UHGV-0149762_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149762_26	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0149762_26	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0149762_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149762_28	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0149762_28	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0149762_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0149762_29	PHROG	phrog_3878	NA	unknown function
UHGV-0149762_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0149762_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0149762_30	UniRef90	UniRef90_UPI001D07D29E	dUTP diphosphatase	NA
UHGV-0149762_30	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0149762_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-0149762_30	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0149762_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0149762_30	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0149762_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0149762_31	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149762_31	UniRef90	UniRef90_UPI001D065A38	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0149762_31	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0149762_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0149762_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0149762_32	PHROG	phrog_21026	NA	unknown function
UHGV-0149762_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0149762_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0149762_34	UniRef90	UniRef90_K9D671	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0149762_34	eggNOG-mapper	883156.HMPREF9282_00518	C-5 cytosine-specific DNA methylase	NA
UHGV-0149762_34	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0149762_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0149762_34	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0149762_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0149762_34	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0149762_37	PHROG	phrog_1672	NA	unknown function
UHGV-0149762_37	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0149762_38	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0149762_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149762_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149762_39	UniRef90	UniRef90_UPI0019613F2D	single-stranded DNA-binding protein	NA
UHGV-0149762_39	eggNOG-mapper	879309.HMPREF9199_0149	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0149762_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149762_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149762_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149762_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149762_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149762_40	PHROG	phrog_5070	NA	unknown function
UHGV-0149762_40	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-0149762_40	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0149762_40	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0149762_40	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0149762_40	Structural annotation	NF040481	NA	NA
UHGV-0149762_41	PHROG	phrog_9804	NA	unknown function
UHGV-0149762_41	UniRef90	UniRef90_A0A7Y2L7R9	Inhibitor_G39P domain-containing protein	NA
UHGV-0149762_41	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0149762_41	Structural annotation	PF11417	NA	NA
UHGV-0149762_42	PHROG	phrog_1163	NA	unknown function
UHGV-0149762_42	UniRef90	UniRef90_UPI001D075DB7	conserved phage C-terminal domain-containing protein	NA
UHGV-0149762_42	eggNOG-mapper	372457.A7DYC7_9CAUD	calcium ion binding	NA
UHGV-0149762_42	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0149762_42	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0149762_42	Structural annotation	PF09524, PF09681, TIGR02220, TIGR01714	NA	NA
UHGV-0149762_43	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0149762_43	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149762_43	UniRef90	UniRef90_UPI001D092C21	HNH endonuclease	NA
UHGV-0149762_43	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149762_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0149762_43	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0149762_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0149762_44	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0149762_44	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0149762_45	PHROG	phrog_14970	NA	unknown function
UHGV-0149762_45	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0149762_45	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-0149762_45	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0149762_45	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0149762_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0149762_46	UniRef90	UniRef90_UPI001D06B209	siphovirus Gp157 family protein	NA
UHGV-0149762_46	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0149762_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0149762_46	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0149762_48	Structural annotation	NF008912	NA	NA
UHGV-0149762_49	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0149762_49	UniRef90	UniRef90_A0A2S7ZGX8	HTH_17 domain-containing protein	NA
UHGV-0149762_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0149762_49	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0149762_50	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0149762_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149762_50	UniRef90	UniRef90_UPI0011DD19D6	helix-turn-helix domain-containing protein	NA
UHGV-0149762_50	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0149762_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0149762_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0149762_50	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0149762_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0149762_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149762_51	UniRef90	UniRef90_UPI000E7282BC	helix-turn-helix transcriptional regulator	NA
UHGV-0149762_51	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0149762_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149762_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0149762_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0149762_52	PHROG	phrog_87	metallo-protease	other
UHGV-0149762_52	UniRef90	UniRef90_UPI000E707E4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0149762_52	eggNOG-mapper	273068.TTE2126	IrrE N-terminal-like domain	NA
UHGV-0149762_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0149762_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0149762_52	Structural annotation	PF06114, COG2856	NA	NA