UHGV-0149771

Genome information

Genome length 29,032 bps

CDS count 47

Completeness 81.95% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149771
vOTU ID	vOTU-027399
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_404019
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.19
Jumbo phage	No

Genome content
Genome length	29,032 bps
GC content	56.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.05%
Average CDS length	577.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149771_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149771_1	PHROG	phrog_435	endolysin	lysis
UHGV-0149771_1	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149771_1	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0149771_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0149771_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-0149771_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149771_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0149771_2	PHROG	phrog_881	holin	lysis
UHGV-0149771_2	UniRef90	UniRef90_A0A847BKL8	Holin	NA
UHGV-0149771_2	eggNOG-mapper	1121871.AUAT01000024_gene1318	Putative phage holin Dp-1	NA
UHGV-0149771_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0149771_2	Structural annotation	PF16938	NA	NA
UHGV-0149771_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0149771_3	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0149771_3	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0149771_3	Pfam	PF14359	NA	DUF4406
UHGV-0149771_3	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0149771_4	PHROG	phrog_937	hemolysin	other
UHGV-0149771_4	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0149771_6	PHROG	phrog_372	tail protein	tail
UHGV-0149771_6	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-0149771_6	eggNOG-mapper	1507.HMPREF0262_00218	tail collar domain protein	NA
UHGV-0149771_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0149771_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0149771_7	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0149771_7	UniRef90	UniRef90_UPI001030044F	phage tail protein	NA
UHGV-0149771_7	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0149771_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0149771_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0149771_7	COG	COG4926	Phage-related protein	NA
UHGV-0149771_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0149771_9	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0149771_9	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0149771_9	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0149771_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0149771_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0149771_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0149771_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0149771_10	PHROG	phrog_706	NA	unknown function
UHGV-0149771_10	UniRef90	UniRef90_A0A143ZUS4	Bacteriophage Gp15 protein	NA
UHGV-0149771_10	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0149771_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0149771_10	Structural annotation	PF06854	NA	NA
UHGV-0149771_12	PHROG	phrog_820	major tail protein	tail
UHGV-0149771_12	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0149771_12	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0149771_12	COG	COG5492	NA	NA
UHGV-0149771_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0149771_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0149771_13	Structural annotation	PF12691	NA	NA
UHGV-0149771_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0149771_14	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0149771_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0149771_14	Structural annotation	PF11114	NA	NA
UHGV-0149771_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0149771_15	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-0149771_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0149771_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0149771_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0149771_16	eggNOG-mapper	374526.A5GYM1_9CAUD	NA	NA
UHGV-0149771_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0149771_17	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0149771_17	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0149771_17	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0149771_19	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0149771_19	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0149771_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0149771_21	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0149771_21	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0149771_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0149771_21	COG	COG2369	NA	NA
UHGV-0149771_21	Structural annotation	PF06152	NA	NA
UHGV-0149771_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0149771_22	UniRef90	UniRef90_A0A3A6E951	Phage portal protein	NA
UHGV-0149771_22	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0149771_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0149771_22	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0149771_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0149771_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149771_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0149771_23	UniRef90	UniRef90_A0A2V2F595	PBSX family phage terminase large subunit	NA
UHGV-0149771_23	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0149771_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0149771_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0149771_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149771_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0149771_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149771_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0149771_27	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0149771_32	PHROG	phrog_20532	NA	unknown function
UHGV-0149771_32	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0149771_32	Pfam	PF14608	RNA-binding, Nab2-type zinc finger	zf-CCCH_2
UHGV-0149771_32	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0149771_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149771_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149771_35	UniRef90	UniRef90_A0A2V2FR21	Single-stranded DNA-binding protein	NA
UHGV-0149771_35	eggNOG-mapper	138119.DSY2197	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0149771_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149771_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149771_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149771_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149771_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149771_37	PHROG	phrog_9804	NA	unknown function
UHGV-0149771_37	UniRef90	UniRef90_A0A448W1P6	Loader and inhibitor of phage G40P	NA
UHGV-0149771_37	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0149771_37	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0149771_38	PHROG	phrog_16304	NA	unknown function
UHGV-0149771_38	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0149771_38	Pfam	PF19808	NA	DUF6291
UHGV-0149771_38	Structural annotation	PF19808	NA	NA
UHGV-0149771_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0149771_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0149771_40	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0149771_40	Structural annotation	PF05772	NA	NA
UHGV-0149771_41	PHROG	phrog_14970	NA	unknown function
UHGV-0149771_41	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0149771_41	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0149771_41	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0149771_41	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0149771_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0149771_42	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0149771_42	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0149771_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0149771_42	Structural annotation	PF05565	NA	NA
UHGV-0149771_47	PHROG	phrog_7338	NA	unknown function
UHGV-0149771_47	UniRef90	UniRef90_R6MV99	DNA binding domain protein excisionase family	NA
UHGV-0149771_47	eggNOG-mapper	742723.HMPREF9477_00648	Helix-turn-helix domain	NA
UHGV-0149771_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0149771_47	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA