UHGV-0149843

Genome information

Genome length 39,557 bps

CDS count 56

Completeness 97.68% (high-quality)

geNomad score 0.9615

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149843
vOTU ID	vOTU-065381
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_441017
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9615
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.5
Jumbo phage	No

Genome content
Genome length	39,557 bps
GC content	38.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.73%
Average CDS length	667.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149843_1	PHROG	phrog_10934	NA	unknown function
UHGV-0149843_1	eggNOG-mapper	1231377.C426_0907	NA	NA
UHGV-0149843_2	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149843_2	PHROG	phrog_37326	NA	unknown function
UHGV-0149843_2	UniRef90	UniRef90_A0A4U9YND8	LysM domain lipoprotein	NA
UHGV-0149843_2	eggNOG-mapper	1158602.I590_02589	LysM domain	NA
UHGV-0149843_2	Pfam	PF01476	LysM domain	LysM
UHGV-0149843_2	COG	COG1388	LysM repeat	NA
UHGV-0149843_3	PHROG	phrog_18591	NA	unknown function
UHGV-0149843_3	eggNOG-mapper	397291.C804_06305	NA	NA
UHGV-0149843_4	PHROG	phrog_998	endolysin	lysis
UHGV-0149843_4	UniRef90	UniRef90_S4B424	Cpl-7 lysozyme protein	NA
UHGV-0149843_4	eggNOG-mapper	272623.L82453	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0149843_4	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0149843_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0149843_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0149843_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0149843_4	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0149843_7	PHROG	phrog_199	holin	lysis
UHGV-0149843_7	UniRef90	UniRef90_A0A376H549	Holin	NA
UHGV-0149843_7	eggNOG-mapper	1260356.D920_01818	Bacteriophage holin family	NA
UHGV-0149843_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0149843_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0149843_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0149843_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0149843_9	PHROG	phrog_17240	NA	unknown function
UHGV-0149843_9	UniRef90	UniRef90_A0A7T4G8C7	SGNH/GDSL hydrolase family protein	NA
UHGV-0149843_9	eggNOG-mapper	1158604.I591_00414	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0149843_9	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0149843_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0149843_10	UniRef90	UniRef90_S4BG71	Phage minor structural protein	NA
UHGV-0149843_10	eggNOG-mapper	226185.EF_2001	Prophage endopeptidase tail	NA
UHGV-0149843_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0149843_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0149843_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0149843_10	COG	COG4926	Phage-related protein	NA
UHGV-0149843_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0149843_11	UniRef90	UniRef90_S4B197	Phage tail component protein	NA
UHGV-0149843_11	eggNOG-mapper	1158602.I590_02575	tail component	NA
UHGV-0149843_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0149843_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0149843_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0149843_12	UniRef90	UniRef90_UPI00189E6A9F	phage tail protein	NA
UHGV-0149843_12	eggNOG-mapper	374526.A5GYM8_9CAUD	NA	NA
UHGV-0149843_12	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0149843_13	PHROG	phrog_30816	NA	unknown function
UHGV-0149843_14	PHROG	phrog_1021	NA	unknown function
UHGV-0149843_16	PHROG	phrog_885	major tail protein	tail
UHGV-0149843_16	UniRef90	UniRef90_A0A098ANP7	Putative prophage protein	NA
UHGV-0149843_16	eggNOG-mapper	1158602.I590_02571	NA	NA
UHGV-0149843_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0149843_17	PHROG	phrog_957	head protein	head and packaging
UHGV-0149843_17	eggNOG-mapper	1158602.I590_02570	NA	NA
UHGV-0149843_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149843_18	UniRef90	UniRef90_R2NYH0	HK97 gp10 family phage protein	NA
UHGV-0149843_18	eggNOG-mapper	1158602.I590_02569	NA	NA
UHGV-0149843_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0149843_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0149843_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0149843_19	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0149843_19	UniRef90	UniRef90_A0A3D1J9B0	Phage head-tail adapter protein	NA
UHGV-0149843_19	eggNOG-mapper	1123312.KB904569_gene351	NA	NA
UHGV-0149843_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0149843_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149843_20	PHROG	phrog_1236	head protein	head and packaging
UHGV-0149843_20	UniRef90	UniRef90_R9QLM1	Structural protein	NA
UHGV-0149843_20	eggNOG-mapper	1158602.I590_02567	NA	NA
UHGV-0149843_20	Structural annotation	PF05135	NA	NA
UHGV-0149843_21	PHROG	phrog_15682	NA	unknown function
UHGV-0149843_21	eggNOG-mapper	1497679.EP56_07560	NA	NA
UHGV-0149843_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0149843_22	UniRef90	UniRef90_UPI00189E8B07	phage capsid protein	NA
UHGV-0149843_22	eggNOG-mapper	1196028.ALEF01000043_gene464	NA	NA
UHGV-0149843_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0149843_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0149843_23	UniRef90	UniRef90_A0A376H811	Scaffold protein	NA
UHGV-0149843_23	eggNOG-mapper	226185.EF_0338	Phage minor structural protein GP20	NA
UHGV-0149843_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0149843_23	Structural annotation	PF06810	NA	NA
UHGV-0149843_24	PHROG	phrog_5859	NA	unknown function
UHGV-0149843_24	eggNOG-mapper	565664.EFXG_02666	NA	NA
UHGV-0149843_24	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0149843_25	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0149843_25	UniRef90	UniRef90_UPI001C8B149A	phage head morphogenesis protein	NA
UHGV-0149843_25	eggNOG-mapper	1158602.I590_02559	Phage Mu protein F like protein	NA
UHGV-0149843_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0149843_25	COG	COG2369	NA	NA
UHGV-0149843_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0149843_26	UniRef90	UniRef90_A0A376H642	Portal protein	NA
UHGV-0149843_26	eggNOG-mapper	1158602.I590_02557	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0149843_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0149843_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0149843_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0149843_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0149843_27	UniRef90	UniRef90_R2RM60	PBSX family phage terminase, large subunit	NA
UHGV-0149843_27	eggNOG-mapper	1158602.I590_02556	Terminase-like family	NA
UHGV-0149843_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0149843_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0149843_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0149843_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0149843_27	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0149843_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0149843_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0149843_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0149843_28	UniRef90	UniRef90_UPI00065DDACC	terminase small subunit	NA
UHGV-0149843_28	eggNOG-mapper	1158602.I590_02555	Terminase small subunit	NA
UHGV-0149843_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0149843_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0149843_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0149843_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149843_30	UniRef90	UniRef90_A0A7U0A3X7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0149843_30	eggNOG-mapper	1140001.I571_01824	NA	NA
UHGV-0149843_31	PHROG	phrog_3745	NA	unknown function
UHGV-0149843_31	UniRef90	UniRef90_A0A0V8E9C3	NA	NA
UHGV-0149843_31	eggNOG-mapper	1140001.I571_01823	NA	NA
UHGV-0149843_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0149843_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149843_32	UniRef90	UniRef90_A0A7T4GAN8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0149843_32	eggNOG-mapper	1140001.I571_01822	Endodeoxyribonuclease RusA	NA
UHGV-0149843_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0149843_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0149843_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0149843_33	PHROG	phrog_2169	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0149843_33	eggNOG-mapper	1158614.I592_02279	NA	NA
UHGV-0149843_34	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0149843_34	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0149843_34	UniRef90	UniRef90_A0A7T4GAP8	AAA family ATPase	NA
UHGV-0149843_34	eggNOG-mapper	1486428.A0A097BY39_9CAUD	hydrolase activity, acting on acid anhydrides	NA
UHGV-0149843_34	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0149843_34	Pfam	PF13481	AAA domain	AAA_25
UHGV-0149843_34	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0149843_35	UniRef90	UniRef90_UPI0010E64057	SlyX family protein	NA
UHGV-0149843_36	UniRef90	UniRef90_C9A183	Predicted protein	NA
UHGV-0149843_36	eggNOG-mapper	565653.EGBG_01952	NA	NA
UHGV-0149843_36	Structural annotation	NF010465, COG3655	NA	NA
UHGV-0149843_38	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0149843_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0149843_38	UniRef90	UniRef90_A0A7T4KS95	DEAD/DEAH box helicase	NA
UHGV-0149843_38	eggNOG-mapper	1486428.A0A097BY72_9CAUD	helicase activity	NA
UHGV-0149843_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0149843_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0149843_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0149843_38	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0149843_39	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149843_39	UniRef90	UniRef90_UPI00065DE8FE	NA	NA
UHGV-0149843_39	eggNOG-mapper	861455.HMPREF9184_01014	NA	NA
UHGV-0149843_39	Structural annotation	PF06573	NA	NA
UHGV-0149843_40	PHROG	phrog_36282	NA	unknown function
UHGV-0149843_41	PHROG	phrog_1029	NA	unknown function
UHGV-0149843_41	eggNOG-mapper	1158614.I592_02291	NA	NA
UHGV-0149843_41	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0149843_42	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0149843_42	UniRef90	UniRef90_A0A7T4GAR5	Replication terminator protein	NA
UHGV-0149843_42	eggNOG-mapper	1260356.D920_00101	NA	NA
UHGV-0149843_43	PHROG	phrog_2698	NA	unknown function
UHGV-0149843_43	UniRef90	UniRef90_UPI00148D30D4	NA	NA
UHGV-0149843_43	eggNOG-mapper	1486428.A0A097BY29_9CAUD	NA	NA
UHGV-0149843_43	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0149843_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0149843_44	UniRef90	UniRef90_A0A7T4GAP1	ATP-binding protein	NA
UHGV-0149843_44	eggNOG-mapper	1486428.A0A097BY66_9CAUD	AAA domain	NA
UHGV-0149843_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0149843_44	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0149843_45	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0149843_45	PHROG	phrog_1499	NA	unknown function
UHGV-0149843_45	UniRef90	UniRef90_A0A7T4GAU8	AAA family ATPase	NA
UHGV-0149843_45	eggNOG-mapper	1260356.D920_00104	AAA domain	NA
UHGV-0149843_45	PADLOC	AAA_15	NA	NA
UHGV-0149843_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0149843_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0149843_45	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0149843_46	PHROG	phrog_4690	NA	unknown function
UHGV-0149843_46	eggNOG-mapper	1140002.I570_01465	NA	NA
UHGV-0149843_47	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0149843_47	UniRef90	UniRef90_UPI00190470C2	helix-turn-helix domain containing protein	NA
UHGV-0149843_47	eggNOG-mapper	1158601.I585_01187	NA	NA
UHGV-0149843_47	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0149843_47	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0149843_48	Structural annotation	PF13035	NA	NA
UHGV-0149843_49	eggNOG-mapper	1300150.EMQU_2525	NA	NA
UHGV-0149843_49	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0149843_50	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0149843_50	UniRef90	UniRef90_A0A7T4GAR6	Transcriptional regulator	NA
UHGV-0149843_50	eggNOG-mapper	1300150.EMQU_2526	NA	NA
UHGV-0149843_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0149843_51	UniRef90	UniRef90_A0A7T4KSQ9	Helix-turn-helix transcriptional regulator	NA
UHGV-0149843_51	eggNOG-mapper	1300150.EMQU_2529	Helix-turn-helix XRE-family like proteins	NA
UHGV-0149843_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0149843_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149843_51	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0149843_52	PHROG	phrog_87	metallo-protease	other
UHGV-0149843_52	UniRef90	UniRef90_A0A7T4KSA0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0149843_52	eggNOG-mapper	1300150.EMQU_2530	IrrE N-terminal-like domain	NA
UHGV-0149843_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0149843_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0149843_55	KOfam	K14059	int; integrase	NA
UHGV-0149843_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0149843_55	UniRef90	UniRef90_A0A7T4KSF7	Site-specific integrase	NA
UHGV-0149843_55	eggNOG-mapper	1300150.EMQU_2531	Belongs to the 'phage' integrase family	NA
UHGV-0149843_55	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0149843_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0149843_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0149843_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0149843_55	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA