UHGV-0149868

Genome information

vOTU vOTU-021955

Genome length 11,692 bps

CDS count 15

Completeness 85.69% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149868
vOTU ID	vOTU-021955
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_413194
BioSample	SAMN05414991
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.54
Jumbo phage	No

Genome content
Genome length	11,692 bps
GC content	50.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	89.77%
Average CDS length	703.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149868_1	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0149868_1	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0149868_1	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0149868_1	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0149868_1	Structural annotation	PF03175, MF_04055	NA	NA
UHGV-0149868_2	Structural annotation	PF17427	NA	NA
UHGV-0149868_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0149868_3	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0149868_3	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0149868_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0149868_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0149868_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0149868_5	PHROG	phrog_435	endolysin	lysis
UHGV-0149868_5	UniRef90	UniRef90_UPI001AEB181E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149868_5	eggNOG-mapper	1410668.JNKC01000001_gene1911	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149868_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0149868_5	Pfam	PF05036	SPOR domain	SPOR
UHGV-0149868_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0149868_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0149868_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0149868_8	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0149868_9	UniRef90	UniRef90_A0A3D2KYK3	Peptidase C51 domain-containing protein	NA
UHGV-0149868_9	eggNOG-mapper	931626.Awo_c23170	CHAP domain	NA
UHGV-0149868_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0149868_9	COG	COG3942	Surface antigen	NA
UHGV-0149868_9	Structural annotation	COG3942	NA	NA
UHGV-0149868_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0149868_10	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0149868_10	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0149868_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0149868_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0149868_14	KOfam	K22489	hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility	NA
UHGV-0149868_14	UniRef90	UniRef90_A0A369LCK6	MarR family transcriptional regulator	NA
UHGV-0149868_14	eggNOG-mapper	1034345.CAEM01000002_gene1215	Transcriptional regulator	NA
UHGV-0149868_14	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0149868_14	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0149868_15	eggNOG-mapper	1034345.CAEM01000002_gene1214	NA	NA