UHGV-0149919

Genome information

Genome length 37,339 bps

CDS count 49

Completeness 63.09% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0149919
vOTU ID	vOTU-018154
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_417232
BioSample	SAMN05414998
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	63.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.85
Jumbo phage	No

Genome content
Genome length	37,339 bps
GC content	56.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.38%
Average CDS length	713.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0149919_2	UniRef90	UniRef90_UPI00056915CA	zinc-ribbon domain-containing protein	NA
UHGV-0149919_2	eggNOG-mapper	1410618.JNKI01000008_gene522	NA	NA
UHGV-0149919_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0149919_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0149919_3	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0149919_3	UniRef90	UniRef90_A0A840UIJ2	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-0149919_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0149919_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0149919_3	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0149919_7	eggNOG-mapper	469617.FUAG_01822	NA	NA
UHGV-0149919_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0149919_11	eggNOG-mapper	1392502.JNIO01000002_gene51	NA	NA
UHGV-0149919_11	Structural annotation	PF21578	NA	NA
UHGV-0149919_12	KOfam	K03700	recU; recombination protein U	NA
UHGV-0149919_12	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0149919_12	UniRef90	UniRef90_A0A1H0P4X6	Holliday junction resolvase RecU	NA
UHGV-0149919_12	eggNOG-mapper	1392502.JNIO01000008_gene1290	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0149919_12	Pfam	PF03838	Recombination protein U	RecU
UHGV-0149919_12	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0149919_12	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0149919_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0149919_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0149919_13	UniRef90	UniRef90_A0A1H0P4D7	Chromosome partitioning protein	NA
UHGV-0149919_13	eggNOG-mapper	1280706.AUJE01000010_gene635	AAA domain	NA
UHGV-0149919_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0149919_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0149919_13	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0149919_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0149919_15	PHROG	phrog_15982	NA	unknown function
UHGV-0149919_15	UniRef90	UniRef90_UPI0004238EA6	ParB N-terminal domain-containing protein	NA
UHGV-0149919_15	eggNOG-mapper	1280706.AUJE01000010_gene636	ParB-like nuclease domain	NA
UHGV-0149919_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0149919_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0149919_15	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0149919_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0149919_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0149919_21	UniRef90	UniRef90_I0GSV3	Single-stranded DNA-binding protein	NA
UHGV-0149919_21	eggNOG-mapper	927704.SELR_21320	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0149919_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0149919_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0149919_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0149919_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0149919_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0149919_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0149919_26	UniRef90	UniRef90_UPI000DA60FA2	NA	NA
UHGV-0149919_26	eggNOG-mapper	1392502.JNIO01000008_gene1304	DNA-templated transcription, initiation	NA
UHGV-0149919_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0149919_26	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0149919_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0149919_28	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0149919_28	UniRef90	UniRef90_C4Z826	Sigma70_r4_2 domain-containing protein	NA
UHGV-0149919_28	eggNOG-mapper	1120985.AUMI01000019_gene2239	Terminase small subunit	NA
UHGV-0149919_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0149919_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0149919_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0149919_28	Structural annotation	PF03592, PF06056, COG3728	NA	NA
UHGV-0149919_29	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0149919_29	UniRef90	UniRef90_UPI001D0121F4	AAA family ATPase	NA
UHGV-0149919_29	eggNOG-mapper	927704.SELR_18240	adenylate kinase activity	NA
UHGV-0149919_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0149919_29	Pfam	PF13671	AAA domain	AAA_33
UHGV-0149919_29	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-0149919_29	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0149919_30	PHROG	phrog_1066	NA	unknown function
UHGV-0149919_30	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-0149919_30	eggNOG-mapper	1123288.SOV_2c03670	NA	NA
UHGV-0149919_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0149919_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0149919_31	UniRef90	UniRef90_I0GRZ3	Putative phage terminase	NA
UHGV-0149919_31	eggNOG-mapper	927704.SELR_18220	Phage Terminase	NA
UHGV-0149919_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0149919_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0149919_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0149919_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0149919_32	PHROG	phrog_29023	NA	unknown function
UHGV-0149919_32	UniRef90	UniRef90_I0GRZ2	Putative phage portal protein	NA
UHGV-0149919_32	eggNOG-mapper	927704.SELR_18210	Phage portal protein	NA
UHGV-0149919_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0149919_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0149919_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0149919_33	KOfam	K06904	NA	NA
UHGV-0149919_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0149919_33	UniRef90	UniRef90_I0GRZ1	Putative phage prohead protease	NA
UHGV-0149919_33	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0149919_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0149919_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0149919_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0149919_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0149919_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0149919_34	UniRef90	UniRef90_A0A0U1L1V2	Phage major capsid protein	NA
UHGV-0149919_34	eggNOG-mapper	1123288.SOV_2c03610	Phage capsid family	NA
UHGV-0149919_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0149919_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0149919_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0149919_36	eggNOG-mapper	927704.SELR_18180	NA	NA
UHGV-0149919_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0149919_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0149919_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0149919_37	UniRef90	UniRef90_UPI0008DA6A88	phage head closure protein	NA
UHGV-0149919_37	eggNOG-mapper	910314.HMPREF9220_1092	Phage head-tail joining protein	NA
UHGV-0149919_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0149919_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0149919_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0149919_38	UniRef90	UniRef90_UPI0018C66872	HK97 gp10 family phage protein	NA
UHGV-0149919_38	eggNOG-mapper	861450.HMPREF0080_02051	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0149919_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0149919_38	COG	COG5005	NA	NA
UHGV-0149919_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0149919_39	PHROG	phrog_176	tail terminator	connector
UHGV-0149919_39	UniRef90	UniRef90_UPI0008DA5300	NA	NA
UHGV-0149919_39	eggNOG-mapper	679201.HMPREF9334_00326	NA	NA
UHGV-0149919_39	Pfam	PF11367	NA	DUF3168
UHGV-0149919_39	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0149919_40	PHROG	phrog_1407	major tail protein	tail
UHGV-0149919_40	UniRef90	UniRef90_UPI0018C4BAA8	phage tail tube protein	NA
UHGV-0149919_40	eggNOG-mapper	1111454.HMPREF1250_0257	Phage tail tube protein	NA
UHGV-0149919_40	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0149919_40	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0149919_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0149919_42	PHROG	phrog_7377	NA	unknown function
UHGV-0149919_42	eggNOG-mapper	679201.HMPREF9334_00329	NA	NA
UHGV-0149919_43	PHROG	phrog_18863	NA	unknown function
UHGV-0149919_43	UniRef90	UniRef90_A0A414NZU2	SLT domain-containing protein	NA
UHGV-0149919_43	eggNOG-mapper	679201.HMPREF9334_00330	tape measure	NA
UHGV-0149919_43	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0149919_43	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0149919_43	COG	COG4805	NA	NA
UHGV-0149919_43	Structural annotation	TIGR01760	NA	NA
UHGV-0149919_44	eggNOG-mapper	679201.HMPREF9334_00331	NA	NA
UHGV-0149919_44	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0149919_45	PHROG	phrog_18	minor tail protein	tail
UHGV-0149919_45	UniRef90	UniRef90_A0A4R3K4E0	Phage-related protein	NA
UHGV-0149919_45	eggNOG-mapper	679201.HMPREF9334_00332	NA	NA
UHGV-0149919_45	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0149919_45	COG	COG4672	Phage tail protein	NA
UHGV-0149919_45	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0149919_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0149919_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0149919_46	UniRef90	UniRef90_A0A7X7U6N1	Methyltransferase	NA
UHGV-0149919_46	eggNOG-mapper	1474867.A0A076FIB3_9PHYC	N-methyltransferase activity	NA
UHGV-0149919_46	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0149919_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0149919_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0149919_47	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0149919_47	PHROG	phrog_329	minor tail protein	tail
UHGV-0149919_47	UniRef90	UniRef90_G5GM52	NlpC/P60 domain-containing protein	NA
UHGV-0149919_47	eggNOG-mapper	679201.HMPREF9334_00333	NlpC/P60 family	NA
UHGV-0149919_47	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0149919_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0149919_47	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0149919_48	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0149919_48	UniRef90	UniRef90_G5GM53	Phage-tail_3 domain-containing protein	NA
UHGV-0149919_48	eggNOG-mapper	679201.HMPREF9334_00334	cellulase activity	NA
UHGV-0149919_48	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0149919_48	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0149919_48	COG	COG1511	NA	NA
UHGV-0149919_48	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0149919_49	PHROG	phrog_6465	tail protein	tail
UHGV-0149919_49	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0149919_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0149919_49	Structural annotation	COG4675	NA	NA