UHGV-0150007

Genome information

vOTU vOTU-019465

Genome length 32,041 bps

CDS count 58

Completeness 86.63% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150007
vOTU ID	vOTU-019465
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_433894
BioSample	SAMN06018975
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.9
Jumbo phage	No

Genome content
Genome length	32,041 bps
GC content	40.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.30%
Average CDS length	520.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150007_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0150007_1	PHROG	phrog_7854	endolysin	lysis
UHGV-0150007_1	UniRef90	UniRef90_A0A173ZE93	Autolysin	NA
UHGV-0150007_1	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0150007_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0150007_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0150007_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0150007_1	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0150007_3	PHROG	phrog_1129	holin	lysis
UHGV-0150007_3	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0150007_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0150007_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0150007_3	Structural annotation	PF06946	NA	NA
UHGV-0150007_4	PHROG	phrog_1009	NA	unknown function
UHGV-0150007_4	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0150007_4	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0150007_5	eggNOG-mapper	641107.CDLVIII_1197	NA	NA
UHGV-0150007_7	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0150007_8	PHROG	phrog_12931	NA	unknown function
UHGV-0150007_8	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-0150007_9	PHROG	phrog_25635	NA	unknown function
UHGV-0150007_9	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0150007_9	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-0150007_9	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-0150007_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0150007_10	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0150007_10	eggNOG-mapper	411462.DORLON_00775	NA	NA
UHGV-0150007_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0150007_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0150007_11	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0150007_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0150007_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0150007_12	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-0150007_12	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0150007_12	COG	COG1511	NA	NA
UHGV-0150007_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0150007_13	PHROG	phrog_5602	NA	unknown function
UHGV-0150007_13	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0150007_13	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0150007_14	PHROG	phrog_706	NA	unknown function
UHGV-0150007_14	UniRef90	UniRef90_A6BEQ8	Bacteriophage Gp15 protein	NA
UHGV-0150007_14	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0150007_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0150007_14	Structural annotation	PF06854	NA	NA
UHGV-0150007_15	PHROG	phrog_4450	NA	unknown function
UHGV-0150007_15	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-0150007_15	Pfam	PF20378	NA	DUF6673
UHGV-0150007_15	Structural annotation	PF20378	NA	NA
UHGV-0150007_16	PHROG	phrog_3099	NA	unknown function
UHGV-0150007_16	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0150007_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0150007_17	PHROG	phrog_3266	tail completion	connector
UHGV-0150007_17	eggNOG-mapper	742765.HMPREF9457_02131	NA	NA
UHGV-0150007_17	Structural annotation	PF12691	NA	NA
UHGV-0150007_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0150007_18	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0150007_18	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0150007_18	Structural annotation	PF11114	NA	NA
UHGV-0150007_19	PHROG	phrog_3366	NA	unknown function
UHGV-0150007_19	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0150007_19	Pfam	PF20536	NA	DUF6751
UHGV-0150007_19	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0150007_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0150007_20	UniRef90	UniRef90_C4IFE6	Putative gp8	NA
UHGV-0150007_20	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0150007_20	Structural annotation	PF05135	NA	NA
UHGV-0150007_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0150007_21	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0150007_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0150007_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0150007_22	UniRef90	UniRef90_A0A1C5W5U5	Phage minor structural protein GP20	NA
UHGV-0150007_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0150007_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0150007_22	Structural annotation	PF06810	NA	NA
UHGV-0150007_23	PHROG	phrog_3711	NA	unknown function
UHGV-0150007_23	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-0150007_24	PHROG	phrog_21033	NA	unknown function
UHGV-0150007_24	UniRef90	UniRef90_UPI001C120AA5	phage minor capsid protein	NA
UHGV-0150007_24	eggNOG-mapper	411462.DORLON_00790	NA	NA
UHGV-0150007_24	COG	COG2369	NA	NA
UHGV-0150007_25	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150007_25	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0150007_25	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0150007_25	Pfam	PF00847	AP2 domain	AP2
UHGV-0150007_25	Structural annotation	PF17375	NA	NA
UHGV-0150007_27	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0150007_27	eggNOG-mapper	663278.Ethha_2491	NA	NA
UHGV-0150007_27	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0150007_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0150007_28	UniRef90	UniRef90_A0A1Q6J9C4	Minor capsid protein	NA
UHGV-0150007_28	eggNOG-mapper	411462.DORLON_00794	NA	NA
UHGV-0150007_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0150007_28	COG	COG2369	NA	NA
UHGV-0150007_28	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0150007_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0150007_29	UniRef90	UniRef90_A0A174JNH8	Phage portal protein, putative, A118 family	NA
UHGV-0150007_29	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0150007_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0150007_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150007_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0150007_30	UniRef90	UniRef90_A0A173ZBW3	Phage terminase, large subunit, PBSX family	NA
UHGV-0150007_30	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0150007_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0150007_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0150007_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150007_30	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0150007_31	PHROG	phrog_2412	NA	unknown function
UHGV-0150007_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0150007_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0150007_32	PHROG	phrog_2990	NA	unknown function
UHGV-0150007_32	UniRef90	UniRef90_A0A417CPS7	NA	NA
UHGV-0150007_32	eggNOG-mapper	411462.DORLON_00798	NA	NA
UHGV-0150007_33	PHROG	phrog_9125	NA	unknown function
UHGV-0150007_33	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0150007_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0150007_34	UniRef90	UniRef90_UPI0018988F04	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0150007_34	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0150007_34	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0150007_34	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0150007_35	PHROG	phrog_7024	NA	unknown function
UHGV-0150007_35	eggNOG-mapper	1410653.JHVC01000011_gene971	NA	NA
UHGV-0150007_35	AcrCatalog	cluster_1398	NA	NA
UHGV-0150007_37	Structural annotation	PF10842, MF_00436, NF037951, COG1923	NA	NA
UHGV-0150007_39	PHROG	phrog_15198	NA	unknown function
UHGV-0150007_39	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0150007_39	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0150007_39	Pfam	PF04448	NA	DUF551
UHGV-0150007_39	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0150007_40	PHROG	phrog_26445	NA	unknown function
UHGV-0150007_40	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0150007_40	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0150007_40	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-0150007_42	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150007_42	UniRef90	UniRef90_A0A174JN05	NA	NA
UHGV-0150007_42	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0150007_42	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0150007_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0150007_42	Structural annotation	PF14297	NA	NA
UHGV-0150007_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0150007_43	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0150007_43	UniRef90	UniRef90_A0A174JQ61	Holliday junction resolvase	NA
UHGV-0150007_43	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0150007_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0150007_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0150007_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0150007_44	PHROG	phrog_1029	NA	unknown function
UHGV-0150007_44	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0150007_44	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0150007_45	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0150007_45	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0150007_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0150007_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0150007_46	UniRef90	UniRef90_A0A174JN35	p33	NA
UHGV-0150007_46	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0150007_46	Pfam	PF03837	RecT family	RecT
UHGV-0150007_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0150007_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0150007_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0150007_47	PHROG	phrog_674	NA	unknown function
UHGV-0150007_47	UniRef90	UniRef90_A0A845KID5	NA	NA
UHGV-0150007_47	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0150007_47	Pfam	PF07083	NA	DUF1351
UHGV-0150007_47	Structural annotation	PF07083	NA	NA
UHGV-0150007_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150007_48	UniRef90	UniRef90_A0A1Q6PRD9	Recombinase	NA
UHGV-0150007_48	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0150007_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0150007_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0150007_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0150007_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0150007_53	PHROG	phrog_32168	NA	unknown function
UHGV-0150007_53	Structural annotation	PF13248, MF_00788, NF041910, COG1552	NA	NA
UHGV-0150007_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150007_56	UniRef90	UniRef90_A0A173VG88	Helix-turn-helix domain	NA
UHGV-0150007_56	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0150007_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150007_56	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0150007_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0150007_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150007_57	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-0150007_57	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0150007_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150007_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0150007_57	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0150007_58	PHROG	phrog_20886	NA	unknown function
UHGV-0150007_58	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0150007_58	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0150007_58	Structural annotation	PF06114	NA	NA