UHGV-0150020

Genome information

Genome length 26,951 bps

CDS count 31

Completeness 61.18% (medium-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150020
vOTU ID	vOTU-027408
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399387
BioSample	SAMN05356872
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.26
Jumbo phage	No

Genome content
Genome length	26,951 bps
GC content	66.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	90.67%
Average CDS length	790.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150020_1	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0150020_1	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0150020_1	UniRef90	UniRef90_A0A1Y4BTH9	Putative mRNA interferase YoeB	NA
UHGV-0150020_1	eggNOG-mapper	742823.HMPREF9465_02183	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-0150020_1	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0150020_1	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0150020_1	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0150020_1	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0150020_2	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0150020_2	UniRef90	UniRef90_A0A6N3B2Y0	RelB antitoxin	NA
UHGV-0150020_2	eggNOG-mapper	1235792.C808_01427	RelB antitoxin	NA
UHGV-0150020_2	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0150020_2	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0150020_4	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0150020_4	UniRef90	UniRef90_A0A1Y4U3U1	Antirestriction protein	NA
UHGV-0150020_4	eggNOG-mapper	1121105.ATXL01000012_gene1856	Antirestriction protein (ArdA)	NA
UHGV-0150020_4	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0150020_4	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0150020_4	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0150020_4	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0150020_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150020_7	UniRef90	UniRef90_UPI00164BCC03	HNH endonuclease	NA
UHGV-0150020_7	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0150020_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0150020_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0150020_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0150020_9	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-0150020_9	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0150020_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0150020_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0150020_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0150020_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0150020_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0150020_10	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0150020_10	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0150020_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0150020_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0150020_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0150020_11	KOfam	K06904	NA	NA
UHGV-0150020_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0150020_11	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0150020_11	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0150020_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0150020_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0150020_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0150020_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0150020_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0150020_12	UniRef90	UniRef90_R5VT22	Phage major capsid protein HK97 family	NA
UHGV-0150020_12	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0150020_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0150020_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0150020_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0150020_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0150020_14	PHROG	phrog_5223	neck protein	connector
UHGV-0150020_14	UniRef90	UniRef90_A0A1L8I5X8	DNA-packaging protein	NA
UHGV-0150020_14	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0150020_14	Structural annotation	TIGR01560	NA	NA
UHGV-0150020_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0150020_15	eggNOG-mapper	1444306.JFZC01000059_gene884	Phage head-tail joining protein	NA
UHGV-0150020_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0150020_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0150020_16	UniRef90	UniRef90_A0A3A6HJZ9	HK97 gp10 family phage protein	NA
UHGV-0150020_16	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0150020_16	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0150020_17	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0150020_17	Structural annotation	PF20765	NA	NA
UHGV-0150020_18	PHROG	phrog_88	major tail protein	tail
UHGV-0150020_18	UniRef90	UniRef90_A0A1I6P410	Phage major tail protein, phi13 family	NA
UHGV-0150020_18	eggNOG-mapper	396034.A6XMK3_9CAUD	NA	NA
UHGV-0150020_18	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0150020_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0150020_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0150020_21	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0150020_21	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0150020_21	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0150020_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0150020_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0150020_21	COG	COG1340	NA	NA
UHGV-0150020_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0150020_22	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0150020_22	eggNOG-mapper	471855.Shel_15460	NA	NA
UHGV-0150020_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0150020_24	PHROG	phrog_3558	tail protein	tail
UHGV-0150020_24	eggNOG-mapper	471855.Shel_15440	Phage minor structural protein, N-terminal	NA
UHGV-0150020_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0150020_24	COG	COG4926	Phage-related protein	NA
UHGV-0150020_25	UniRef90	UniRef90_UPI000E3B6EFE	phage holin family protein	NA
UHGV-0150020_25	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0150020_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0150020_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0150020_26	PHROG	phrog_14030	NA	unknown function
UHGV-0150020_26	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-0150020_26	eggNOG-mapper	608534.GCWU000341_02268	NA	NA
UHGV-0150020_28	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0150020_28	PHROG	phrog_17147	NA	unknown function
UHGV-0150020_28	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0150020_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0150020_29	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0150020_29	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0150020_29	UniRef90	UniRef90_A0A374TR96	Reverse transcriptase domain-containing protein	NA
UHGV-0150020_29	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0150020_29	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0150020_29	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0150020_31	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0150020_31	Structural annotation	NF040910	NA	NA