UHGV-0150046

Genome information

Genome length 56,444 bps

CDS count 96

Completeness 100.00% (complete)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150046
vOTU ID	vOTU-046134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_437766
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.77
Jumbo phage	No

Genome content
Genome length	56,444 bps
GC content	48.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	83.99%
Average CDS length	496.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150046_1	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0150046_1	COG	COG5492	NA	NA
UHGV-0150046_2	eggNOG-mapper	411901.BACCAC_01116	Calcineurin-like phosphoesterase	NA
UHGV-0150046_2	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0150046_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0150046_3	PHROG	phrog_291	endolysin	lysis
UHGV-0150046_3	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0150046_3	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0150046_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0150046_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0150046_3	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0150046_4	PHROG	phrog_1863	NA	unknown function
UHGV-0150046_4	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0150046_5	PHROG	phrog_15303	NA	unknown function
UHGV-0150046_9	PHROG	phrog_16490	NA	unknown function
UHGV-0150046_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0150046_10	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0150046_11	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0150046_14	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0150046_14	PHROG	phrog_3757	NA	unknown function
UHGV-0150046_14	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0150046_14	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0150046_14	PADLOC	IetA_00002	NA	ietAS
UHGV-0150046_14	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0150046_14	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0150046_14	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0150046_15	PHROG	phrog_10980	NA	unknown function
UHGV-0150046_15	UniRef90	UniRef90_G3MA20	Gp279	NA
UHGV-0150046_16	Structural annotation	PF07878	NA	NA
UHGV-0150046_17	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0150046_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0150046_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0150046_18	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0150046_18	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0150046_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0150046_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0150046_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0150046_20	PHROG	phrog_3032	NA	unknown function
UHGV-0150046_21	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150046_21	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0150046_21	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0150046_21	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0150046_21	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0150046_21	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0150046_21	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0150046_22	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0150046_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150046_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0150046_22	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0150046_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150046_26	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0150046_26	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0150046_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0150046_26	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0150046_26	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0150046_27	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0150046_27	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0150046_27	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0150046_27	Structural annotation	TIGR03070	NA	NA
UHGV-0150046_29	Structural annotation	TIGR03826	NA	NA
UHGV-0150046_30	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0150046_30	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0150046_32	Structural annotation	PF14143	NA	NA
UHGV-0150046_33	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0150046_33	eggNOG-mapper	1123399.AQVE01000002_gene2370	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0150046_33	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0150046_33	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0150046_33	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0150046_35	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150046_35	UniRef90	UniRef90_A0A3G2N781	HNH endonuclease	NA
UHGV-0150046_35	eggNOG-mapper	232237.Q7Y5F9_9CAUD	HNH endonuclease	NA
UHGV-0150046_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0150046_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0150046_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0150046_36	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0150046_36	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0150046_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0150046_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0150046_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0150046_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0150046_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0150046_38	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0150046_38	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0150046_38	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0150046_38	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0150046_43	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0150046_47	PHROG	phrog_7704	NA	unknown function
UHGV-0150046_47	UniRef90	UniRef90_UPI001495255A	NA	NA
UHGV-0150046_47	Pfam	PF04448	NA	DUF551
UHGV-0150046_48	Structural annotation	PF16677	NA	NA
UHGV-0150046_50	eggNOG-mapper	1042156.CXIVA_18670	type III restriction enzyme, res subunit	NA
UHGV-0150046_50	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0150046_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0150046_51	PHROG	phrog_11947	NA	unknown function
UHGV-0150046_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150046_55	Pfam	PF04448	NA	DUF551
UHGV-0150046_55	Structural annotation	NF041588	NA	NA
UHGV-0150046_60	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0150046_60	Structural annotation	PF14354	NA	NA
UHGV-0150046_61	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0150046_61	Pfam	PF19808	NA	DUF6291
UHGV-0150046_61	Structural annotation	PF19808	NA	NA
UHGV-0150046_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0150046_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0150046_62	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0150046_62	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0150046_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0150046_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0150046_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0150046_66	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0150046_66	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0150046_70	PHROG	phrog_14275	NA	unknown function
UHGV-0150046_70	UniRef90	UniRef90_UPI0008351D21	Ltp family lipoprotein	NA
UHGV-0150046_70	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0150046_70	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0150046_70	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0150046_71	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0150046_71	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0150046_71	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0150046_71	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0150046_71	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0150046_71	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0150046_71	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0150046_72	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0150046_74	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0150046_74	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0150046_75	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0150046_75	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0150046_75	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0150046_75	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0150046_75	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0150046_75	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0150046_75	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0150046_77	Structural annotation	NF009949	NA	NA
UHGV-0150046_79	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0150046_79	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0150046_79	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0150046_79	COG	COG5410	NA	NA
UHGV-0150046_79	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0150046_81	PHROG	phrog_64	portal protein	head and packaging
UHGV-0150046_81	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0150046_81	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0150046_81	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0150046_81	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0150046_82	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0150046_82	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0150046_82	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0150046_84	PHROG	phrog_909	major head protein	head and packaging
UHGV-0150046_85	PHROG	phrog_29	major head protein	head and packaging
UHGV-0150046_85	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0150046_85	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0150046_85	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0150046_85	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0150046_86	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0150046_86	Structural annotation	TIGR01560	NA	NA
UHGV-0150046_87	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0150046_87	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0150046_88	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0150046_89	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0150046_90	PHROG	phrog_158	major tail protein	tail
UHGV-0150046_90	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0150046_90	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0150046_90	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0150046_91	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0150046_91	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0150046_91	Pfam	PF16478	NA	DUF5055
UHGV-0150046_91	Structural annotation	PF16478	NA	NA
UHGV-0150046_92	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0150046_93	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0150046_93	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0150046_93	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0150046_94	PHROG	phrog_1194	NA	unknown function
UHGV-0150046_94	Pfam	PF20458	NA	DUF6711
UHGV-0150046_94	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0150046_95	PHROG	phrog_13879	NA	unknown function
UHGV-0150046_95	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0150046_95	Pfam	PF19789	NA	DUF6273
UHGV-0150046_95	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0150046_96	PHROG	phrog_18725	NA	unknown function
UHGV-0150046_96	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0150046_96	COG	COG5492	NA	NA