UHGV-0150108

Genome information

Genome length 31,578 bps

CDS count 49

Completeness 78.23% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0150108
vOTU ID	vOTU-027413
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_419641
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46
Jumbo phage	No

Genome content
Genome length	31,578 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	85.70%
Average CDS length	554.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0150108_1	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0150108_1	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0150108_1	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0150108_1	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0150108_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0150108_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0150108_4	PHROG	phrog_88	major tail protein	tail
UHGV-0150108_4	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-0150108_4	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0150108_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0150108_4	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0150108_5	PHROG	phrog_78	tail terminator	connector
UHGV-0150108_5	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0150108_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0150108_7	UniRef90	UniRef90_UPI0016941CCC	phage head-tail connector protein	NA
UHGV-0150108_7	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0150108_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0150108_7	Structural annotation	PF05135	NA	NA
UHGV-0150108_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0150108_9	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0150108_9	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-0150108_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0150108_10	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0150108_10	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-0150108_10	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0150108_10	Pfam	PF14265	NA	DUF4355
UHGV-0150108_10	Structural annotation	PF14265	NA	NA
UHGV-0150108_12	eggNOG-mapper	378806.STAUR_1524	NA	NA
UHGV-0150108_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0150108_13	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-0150108_13	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0150108_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0150108_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0150108_13	COG	COG2369	NA	NA
UHGV-0150108_13	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0150108_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0150108_14	UniRef90	UniRef90_UPI0018AA6EE5	HK97 gp10 family phage protein	NA
UHGV-0150108_14	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0150108_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0150108_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0150108_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0150108_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0150108_15	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0150108_15	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0150108_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0150108_15	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0150108_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0150108_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0150108_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0150108_16	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0150108_16	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0150108_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0150108_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0150108_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0150108_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0150108_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0150108_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0150108_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0150108_17	UniRef90	UniRef90_UPI00100EAEF8	terminase small subunit	NA
UHGV-0150108_17	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-0150108_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0150108_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0150108_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0150108_18	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0150108_18	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0150108_18	UniRef90	UniRef90_A0A416D4J0	N6_Mtase domain-containing protein	NA
UHGV-0150108_18	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0150108_18	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0150108_18	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0150108_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0150108_18	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0150108_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0150108_19	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0150108_19	Pfam	PF07374	NA	DUF1492
UHGV-0150108_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0150108_20	PHROG	phrog_4292	NA	unknown function
UHGV-0150108_22	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0150108_24	PHROG	phrog_15609	NA	unknown function
UHGV-0150108_24	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-0150108_24	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0150108_24	Pfam	PF11300	NA	DUF3102
UHGV-0150108_24	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0150108_24	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0150108_25	PHROG	phrog_8470	NA	unknown function
UHGV-0150108_25	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0150108_25	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0150108_25	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0150108_25	Structural annotation	PF14284	NA	NA
UHGV-0150108_26	PHROG	phrog_36399	NA	unknown function
UHGV-0150108_26	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0150108_29	KOfam	K03700	recU; recombination protein U	NA
UHGV-0150108_29	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0150108_29	UniRef90	UniRef90_V9HRS2	Holliday junction resolvase RecU	NA
UHGV-0150108_29	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0150108_29	Pfam	PF03838	Recombination protein U	RecU
UHGV-0150108_29	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0150108_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0150108_31	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0150108_31	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0150108_31	Structural annotation	PF01446	NA	NA
UHGV-0150108_36	Structural annotation	PF13601, NF041230, COG1846	NA	NA
UHGV-0150108_39	PHROG	phrog_21028	NA	unknown function
UHGV-0150108_41	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0150108_41	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0150108_41	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0150108_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150108_41	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0150108_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0150108_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0150108_42	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0150108_42	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0150108_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0150108_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0150108_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0150108_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0150108_43	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-0150108_43	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-0150108_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0150108_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-0150108_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0150108_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0150108_44	PHROG	phrog_13890	NA	unknown function
UHGV-0150108_44	UniRef90	UniRef90_A0A1C6F5F6	Arc domain-containing protein	NA
UHGV-0150108_44	eggNOG-mapper	1378168.N510_00539	NA	NA
UHGV-0150108_44	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0150108_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0150108_45	UniRef90	UniRef90_A0A373Q8L5	XRE family transcriptional regulator	NA
UHGV-0150108_45	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0150108_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0150108_45	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0150108_46	UniRef90	UniRef90_A0A373Q8M9	HIRAN domain-containing protein	NA
UHGV-0150108_46	eggNOG-mapper	1235802.C823_01066	NA	NA
UHGV-0150108_46	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0150108_46	Structural annotation	PF08797	NA	NA
UHGV-0150108_47	UniRef90	UniRef90_A0A373KVZ7	CopG family transcriptional regulator	NA
UHGV-0150108_47	eggNOG-mapper	1235800.C819_00894	NA	NA
UHGV-0150108_47	Structural annotation	PF01402, NF041793, COG4453	NA	NA